CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008285.1-P	Field mustard	nucleus	98.41	78.02
CDY65284	Canola	nucleus	90.23	71.66
CDX88320	Canola	nucleus	76.59	61.95
CDX87564	Canola	nucleus	59.32	61.12
CDX68080	Canola	nucleus	79.55	60.45
CDY48545	Canola	nucleus, plastid	76.14	58.98
AT1G76880.1	Thale cress	nucleus	80.68	58.87
CDY45957	Canola	nucleus	44.55	40.16
KRH70308	Soybean	nucleus	56.14	39.14
CDY13568	Canola	nucleus	43.64	38.95
KRH08699	Soybean	nucleus	55.68	37.4
KRG91649	Soybean	nucleus	54.09	36.96
KRH35149	Soybean	nucleus	54.55	35.98
CDX85981	Canola	nucleus	28.86	34.79
CDY48546	Canola	nucleus	32.95	34.52
CDY62151	Canola	nucleus	40.23	32.48
CDY71745	Canola	nucleus	39.55	30.42
GSMUA_Achr8P11770_001	Banana	nucleus	11.82	30.41
CDX93785	Canola	nucleus	40.45	30.22
CDY44964	Canola	nucleus	22.27	25.45
Zm00001d032453_P001	Maize	nucleus	45.0	25.26
Zm00001d013849_P001	Maize	nucleus	44.32	25.1
TraesCS1A01G176700.2	Wheat	nucleus	46.36	24.97
TraesCS1D01G162400.1	Wheat	nucleus, plastid	46.36	24.97
TraesCS1B01G203300.2	Wheat	nucleus	45.91	24.82
HORVU1Hr1G046940.4	Barley	nucleus	46.36	24.64
EER91374	Sorghum	nucleus	45.0	24.54
KXG40355	Sorghum	nucleus, plastid	41.14	23.18
TraesCS5A01G558200.1	Wheat	nucleus, plastid	41.14	23.06
TraesCSU01G029700.1	Wheat	nucleus	41.14	23.0
HORVU4Hr1G089120.1	Barley	nucleus, plastid	40.91	22.7
TraesCS4B01G396900.1	Wheat	nucleus	35.0	22.25
CDX70293	Canola	nucleus	28.86	22.24
CDY44379	Canola	nucleus	29.09	21.73
Zm00001d027335_P001	Maize	nucleus	39.77	21.63
CDX80883	Canola	nucleus	24.77	21.37
CDY28914	Canola	nucleus	18.64	21.19
CDY11266	Canola	nucleus	24.55	21.18
CDY40550	Canola	nucleus	18.64	20.97
CDY10364	Canola	nucleus	24.09	20.91
CDY04893	Canola	nucleus	23.41	20.32
CDY17716	Canola	nucleus	15.23	19.31
CDY52502	Canola	nucleus	24.77	18.26
CDY05590	Canola	nucleus	24.77	18.23
CDX86194	Canola	nucleus	24.55	17.7
CDY52482	Canola	nucleus	24.32	17.66
CDX85980	Canola	nucleus	7.27	15.09
CDX77787	Canola	nucleus	19.77	13.55
CDY45956	Canola	cytosol	0.45	2.82
CDX87563	Canola	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDY45955	EnsemblPlantsGene:GSBRNA2T00082955001	Gene3D:1.10.10.60	GO:A0A078I501	InterPro:IPR017877	InterPro:Myb-like_dom
InterPro:SANT/Myb	PANTHER:PTHR21654	PANTHER:PTHR21654:SF19	PFAM:PF13837	PFscan:PS50090	ProteinID:CDY45955
ProteinID:CDY45955.1	SEG:seg	SMART:SM00717	UniParc:UPI0004EDC860	UniProt:A0A078I501	MapMan:15.5.20

Description

BnaA02g17810DBnaA02g17810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I501]

Coordinates

chrLK032643:+:92839..95688

Molecular Weight (calculated)

49923.5 Da

IEP (calculated)

9.898

GRAVY (calculated)

-0.996

Length

440 amino acids

Sequence
(BLAST)

001: MMQQGDSTTT SAATEAVPLQ HNESAATEAA AATSAAVGAF EVSEEMSDRG FGGNRWPRQE TLALLKIRSD MGIAFRDATV KGPLWEEVSR KMGELGYIRN
101: AKKCKEKFEN VYKYHKRTKE GRTEKSEGKT YRFFDQLEAL ETHSTSSSHH HQPQSQPHNN SSMFSTPPPV TTVIPPTTNI TPSFPNISGD FLSDNSTSSS
201: YSTSSDVEVG DTKTTTTRRK KRKRKWKEFF ERLMKQVVGK QEELQRKFLE TVEKREHERM VREESWRVQE IARINREHEI LAQERSMSAA KDAAVTAFLQ
301: KFSEKPNPQC QSIAQPQMEV IHNNQQATQQ QTPPPRPPQP LSALDTMKTD NGDQNMTPVS AGALSSSRWP KVEIEALIKL RTNLDSKYEE NGPKGPLWED
401: ISAGMRRLGF NRNSKRCKEK WENINKYYKK RGTNSTPTTT

Best Arabidopsis Sequence Match ( AT1G76880.1 )
(BLAST)

001: MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL

Arabidopsis Description

Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.