Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015716.1-P | Field mustard | nucleus | 75.12 | 82.21 |
| CDX88320 | Canola | nucleus | 73.8 | 81.8 |
| CDX68080 | Canola | nucleus | 78.28 | 81.52 |
| CDY48545 | Canola | nucleus, plastid | 76.29 | 80.99 |
| Bra008285.1-P | Field mustard | nucleus | 74.46 | 80.9 |
| CDY45955 | Canola | nucleus | 58.87 | 80.68 |
| Bra003703.1-P | Field mustard | nucleus | 80.93 | 79.61 |
| CDY65284 | Canola | nucleus | 72.8 | 79.24 |
| CDY45956 | Canola | cytosol | 8.13 | 69.01 |
| CDX87564 | Canola | nucleus | 46.1 | 65.11 |
| KRH70308 | Soybean | nucleus | 52.74 | 50.4 |
| KRH08699 | Soybean | nucleus | 52.57 | 48.4 |
| KRG91649 | Soybean | nucleus | 49.92 | 46.74 |
| KRH35149 | Soybean | nucleus | 50.25 | 45.43 |
| AT1G76890.2 | Thale cress | nucleus | 42.79 | 44.87 |
| AT1G33240.1 | Thale cress | nucleus | 35.99 | 32.44 |
| Zm00001d013849_P001 | Maize | nucleus | 40.96 | 31.79 |
| Zm00001d032453_P001 | Maize | nucleus | 40.8 | 31.38 |
| EER91374 | Sorghum | nucleus | 41.79 | 31.23 |
| TraesCS1B01G203300.2 | Wheat | nucleus | 41.29 | 30.59 |
| TraesCS1A01G176700.2 | Wheat | nucleus | 41.29 | 30.48 |
| TraesCS1D01G162400.1 | Wheat | nucleus, plastid | 41.29 | 30.48 |
| GSMUA_Achr8P11770_001 | Banana | nucleus | 8.62 | 30.41 |
| HORVU1Hr1G046940.4 | Barley | nucleus | 41.63 | 30.31 |
| TraesCSU01G029700.1 | Wheat | nucleus | 38.47 | 29.48 |
| TraesCS5A01G558200.1 | Wheat | nucleus, plastid | 38.31 | 29.43 |
| KXG40355 | Sorghum | nucleus, plastid | 37.98 | 29.32 |
| TraesCS4B01G396900.1 | Wheat | nucleus | 33.5 | 29.19 |
| HORVU4Hr1G089120.1 | Barley | nucleus, plastid | 38.31 | 29.13 |
| Zm00001d027335_P001 | Maize | nucleus | 36.32 | 27.07 |
| AT5G03680.1 | Thale cress | nucleus | 24.88 | 25.38 |
| AT5G47660.1 | Thale cress | nucleus | 16.75 | 25.38 |
| AT3G10000.1 | Thale cress | nucleus | 19.24 | 24.12 |
| AT5G28300.1 | Thale cress | nucleus | 22.39 | 21.81 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.20 | EntrezGene:844023 | ProteinID:AAG51144.1 | ProteinID:AEE35898.1 | ArrayExpress:AT1G76880 |
| EnsemblPlantsGene:AT1G76880 | RefSeq:AT1G76880 | TAIR:AT1G76880 | RefSeq:AT1G76880-TAIR-G | EnsemblPlants:AT1G76880.1 | TAIR:AT1G76880.1 |
| Unigene:At.70105 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0010192 | GO:GO:0019748 | GO:GO:0019760 | GO:GO:0043565 | GO:GO:0044212 |
| InterPro:IPR017877 | InterPro:Myb-like_dom | RefSeq:NP_177814.1 | PFAM:PF13837 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50090 | PANTHER:PTHR21654 |
| PANTHER:PTHR21654:SF19 | UniProt:Q9C6K3 | InterPro:SANT/Myb | SMART:SM00717 | UniParc:UPI00000A9415 | SEG:seg |
Description
Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K3]
Coordinates
chr1:+:28865314..28868225
Molecular Weight (calculated)
67882.5 Da
IEP (calculated)
6.697
GRAVY (calculated)
-1.105
Length
603 amino acids
Sequence
(BLAST)
(BLAST)
001: MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.