Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48546 | Canola | nucleus | 55.83 | 76.43 |
| Bra003702.1-P | Field mustard | nucleus | 60.35 | 75.76 |
| KRG91651 | Soybean | nucleus | 46.96 | 42.86 |
| AT1G76880.1 | Thale cress | nucleus | 44.87 | 42.79 |
| KRH70307 | Soybean | nucleus | 44.0 | 42.24 |
| KRH08698 | Soybean | nucleus | 43.65 | 40.75 |
| AT1G33240.1 | Thale cress | nucleus | 36.87 | 31.69 |
| Zm00001d032453_P001 | Maize | nucleus | 38.61 | 28.32 |
| TraesCS1D01G162400.1 | Wheat | nucleus, plastid | 40.17 | 28.27 |
| TraesCS1B01G203300.2 | Wheat | nucleus | 40.0 | 28.26 |
| Zm00001d013849_P001 | Maize | nucleus | 38.09 | 28.19 |
| TraesCS1A01G176700.2 | Wheat | nucleus | 39.83 | 28.03 |
| HORVU1Hr1G046940.4 | Barley | nucleus | 40.35 | 28.02 |
| KXG40355 | Sorghum | nucleus, plastid | 37.74 | 27.78 |
| EER91374 | Sorghum | nucleus | 38.43 | 27.39 |
| AT5G47660.1 | Thale cress | nucleus | 18.61 | 26.88 |
| GSMUA_Achr8P11770_001 | Banana | nucleus | 7.65 | 25.73 |
| TraesCS5A01G558200.1 | Wheat | nucleus, plastid | 34.96 | 25.61 |
| Zm00001d027335_P001 | Maize | nucleus | 36.0 | 25.59 |
| HORVU4Hr1G089120.1 | Barley | nucleus, plastid | 34.96 | 25.35 |
| TraesCSU01G029700.1 | Wheat | nucleus | 34.61 | 25.29 |
| TraesCS4B01G396900.1 | Wheat | nucleus | 29.91 | 24.86 |
| AT5G03680.1 | Thale cress | nucleus | 24.0 | 23.35 |
| AT3G10000.1 | Thale cress | nucleus | 18.43 | 22.04 |
| AT5G28300.1 | Thale cress | nucleus | 23.3 | 21.65 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.20 | EntrezGene:844024 | UniProt:A0A178W7Z2 | ProteinID:AAG51145.1 | ProteinID:AEE35899.1 |
| ArrayExpress:AT1G76890 | EnsemblPlantsGene:AT1G76890 | RefSeq:AT1G76890 | TAIR:AT1G76890 | RefSeq:AT1G76890-TAIR-G | EnsemblPlants:AT1G76890.2 |
| TAIR:AT1G76890.2 | EMBL:AY087117 | Unigene:At.25099 | EMBL:BT030363 | ProteinID:CAA05997.1 | ProteinID:CAA51289.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | Symbol:GT2 | InterPro:IPR017877 |
| InterPro:Myb-like_dom | RefSeq:NP_177815.1 | ProteinID:OAP13871.1 | PFAM:PF13837 | PO:PO:0000013 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001185 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50090 | PANTHER:PTHR21654 |
| PANTHER:PTHR21654:SF50 | UniProt:Q39117 | InterPro:SANT/Myb | SMART:SM00717 | UniParc:UPI00000AC915 | SEG:seg |
Description
GT-2Trihelix transcription factor GT-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39117]
Coordinates
chr1:-:28873052..28875435
Molecular Weight (calculated)
65840.6 Da
IEP (calculated)
6.769
GRAVY (calculated)
-1.108
Length
575 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGNSEGLLE SSGGGVGGSV EEEKDMKMEE TGEGAGSGGN RWPRPETLAL LRIRSEMDKA FRDSTLKAPL WEEISRKMME LGYKRSSKKC KEKFENVYKY
101: HKRTKEGRTG KSEGKTYRFF EELEAFETLS SYQPEPESQP AKSSAVITNA PATSSLIPWI SSSNPSTEKS SSPLKHHHQV SVQPITTNPT FLAKQPSSTT
201: PFPFYSSNNT TTVSQPPISN DLMNNVSSLN LFSSSTSSST ASDEEEDHHQ VKSSRKKRKY WKGLFTKLTK ELMEKQEKMQ KRFLETLEYR EKERISREEA
301: WRVQEIGRIN REHETLIHER SNAAAKDAAI ISFLHKISGG QPQQPQQHNH KPSQRKQYQS DHSITFESKE PRAVLLDTTI KMGNYDNNHS VSPSSSRWPK
401: TEVEALIRIR KNLEANYQEN GTKGPLWEEI SAGMRRLGYN RSAKRCKEKW ENINKYFKKV KESNKKRPLD SKTCPYFHQL EALYNERNKS GAMPLPLPLM
501: VTPQRQLLLS QETQTEFETD QREKVGDKED EEEGESEEDE YDEEEEGEGD NETSEFEIVL NKTSSPMDIN NNLFT
101: HKRTKEGRTG KSEGKTYRFF EELEAFETLS SYQPEPESQP AKSSAVITNA PATSSLIPWI SSSNPSTEKS SSPLKHHHQV SVQPITTNPT FLAKQPSSTT
201: PFPFYSSNNT TTVSQPPISN DLMNNVSSLN LFSSSTSSST ASDEEEDHHQ VKSSRKKRKY WKGLFTKLTK ELMEKQEKMQ KRFLETLEYR EKERISREEA
301: WRVQEIGRIN REHETLIHER SNAAAKDAAI ISFLHKISGG QPQQPQQHNH KPSQRKQYQS DHSITFESKE PRAVLLDTTI KMGNYDNNHS VSPSSSRWPK
401: TEVEALIRIR KNLEANYQEN GTKGPLWEEI SAGMRRLGYN RSAKRCKEKW ENINKYFKKV KESNKKRPLD SKTCPYFHQL EALYNERNKS GAMPLPLPLM
501: VTPQRQLLLS QETQTEFETD QREKVGDKED EEEGESEEDE YDEEEEGEGD NETSEFEIVL NKTSSPMDIN NNLFT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.