Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022149.1-P | Field mustard | nucleus | 68.09 | 70.03 |
| CDY28914 | Canola | nucleus | 67.84 | 69.77 |
| CDY40550 | Canola | nucleus | 68.34 | 69.57 |
| Bra024925.1-P | Field mustard | nucleus | 54.77 | 66.67 |
| CDY17716 | Canola | nucleus | 54.77 | 62.82 |
| CDX77787 | Canola | nucleus | 67.84 | 42.06 |
| VIT_00s0259g00210.t01 | Wine grape | nucleus | 21.61 | 40.76 |
| VIT_00s0956g00030.t01 | Wine grape | nucleus | 21.11 | 39.81 |
| KRH36613 | Soybean | nucleus | 28.39 | 33.43 |
| KRH11595 | Soybean | nucleus | 27.89 | 32.84 |
| Solyc11g012720.1.1 | Tomato | nucleus | 28.39 | 27.97 |
| PGSC0003DMT400034607 | Potato | nucleus | 26.88 | 27.51 |
| AT1G76890.2 | Thale cress | nucleus | 26.88 | 18.61 |
| AT1G33240.1 | Thale cress | nucleus | 30.65 | 18.24 |
| AT1G76880.1 | Thale cress | nucleus | 25.38 | 16.75 |
| AT5G28300.1 | Thale cress | nucleus | 24.37 | 15.67 |
| AT5G03680.1 | Thale cress | nucleus | 20.35 | 13.71 |
| AT3G10000.1 | Thale cress | nucleus | 13.32 | 11.02 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.20 | EntrezGene:834817 | UniProt:A0A178UL41 | ProteinID:AED95547.1 | ArrayExpress:AT5G47660 |
| EnsemblPlantsGene:AT5G47660 | RefSeq:AT5G47660 | TAIR:AT5G47660 | RefSeq:AT5G47660-TAIR-G | EnsemblPlants:AT5G47660.1 | TAIR:AT5G47660.1 |
| ProteinID:BAB09092.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:Homeobox-like_sf | InterPro:IPR017877 | InterPro:Myb-like_dom | RefSeq:NP_199577.1 | ProteinID:OAO93752.1 |
| PFAM:PF13837 | PO:PO:0000293 | PFscan:PS50090 | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF7 | UniProt:Q9FGJ1 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI00000A2542 | SEG:seg | : |
Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FGJ1]
Coordinates
chr5:+:19312747..19314893
Molecular Weight (calculated)
45577.6 Da
IEP (calculated)
5.941
GRAVY (calculated)
-1.007
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MELLAGDCRK RVGDDFEEDI NPFDGSDGGC GWMYGTRQMG SNGNDDALAT LADLASPPQK LKPIRCGVKL PSSSEDRHPL DILAGTLDRL PEMGFGCFEA
101: PLGSKIADVE ESGQLTRGFS KEEDDSLPPL QMEFQARNRI SWDGLSLSSS VDSSDSDSSP DVRKTVTGKR KRETRVKLEH FLEKLVGSMM KRQEKMHNQL
201: INVMEKMEVE RIRREEAWRQ QETERMTQNE EARKQEMARN LSLISFIRSV TGDEIEIPKQ CEFPQPLQQI LPEQCKDEKC ESAQREREIK FRYSSGSGSS
301: GRRWPQEEVQ ALISSRSDVE EKTGINKGAI WDEISARMKE RGYERSAKKC KEKWENMNKY YRRVTEGGQK QPEHSKTRSY FEKLGNFYKT ISSGEREK
101: PLGSKIADVE ESGQLTRGFS KEEDDSLPPL QMEFQARNRI SWDGLSLSSS VDSSDSDSSP DVRKTVTGKR KRETRVKLEH FLEKLVGSMM KRQEKMHNQL
201: INVMEKMEVE RIRREEAWRQ QETERMTQNE EARKQEMARN LSLISFIRSV TGDEIEIPKQ CEFPQPLQQI LPEQCKDEKC ESAQREREIK FRYSSGSGSS
301: GRRWPQEEVQ ALISSRSDVE EKTGINKGAI WDEISARMKE RGYERSAKKC KEKWENMNKY YRRVTEGGQK QPEHSKTRSY FEKLGNFYKT ISSGEREK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.