Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G47660.1 | KRG93437 | AT3G01320.1 | 19962994 |
| AT5G47660.1 | KRH18559 | AT3G01320.1 | 19962994 |
| AT5G47660.1 | KRH18561 | AT3G01320.1 | 19962994 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH36613 | Soybean | nucleus | 90.53 | 90.53 |
| VIT_00s0956g00030.t01 | Wine grape | nucleus | 33.73 | 54.03 |
| VIT_00s0259g00210.t01 | Wine grape | nucleus | 33.73 | 54.03 |
| PGSC0003DMT400034607 | Potato | nucleus | 42.01 | 36.5 |
| Solyc11g012720.1.1 | Tomato | nucleus | 42.9 | 35.89 |
| KRH35148 | Soybean | cytosol, mitochondrion, nucleus | 16.57 | 28.43 |
| CDY40550 | Canola | nucleus | 32.54 | 28.13 |
| Bra022149.1-P | Field mustard | nucleus | 31.95 | 27.91 |
| AT5G47660.1 | Thale cress | nucleus | 32.84 | 27.89 |
| CDY28914 | Canola | nucleus | 31.66 | 27.65 |
| Bra024925.1-P | Field mustard | nucleus | 21.6 | 22.32 |
| CDY17716 | Canola | nucleus | 21.6 | 21.04 |
| KRH38181 | Soybean | nucleus | 27.81 | 19.18 |
| KRH64101 | Soybean | nucleus | 28.11 | 19.0 |
| KRH53849 | Soybean | nucleus | 27.51 | 18.71 |
| KRH70308 | Soybean | nucleus | 33.73 | 18.07 |
| KRG91649 | Soybean | nucleus | 33.43 | 17.55 |
| KRH08699 | Soybean | nucleus | 33.43 | 17.25 |
| KRH70307 | Soybean | nucleus | 30.18 | 17.03 |
| KRH35149 | Soybean | nucleus | 33.14 | 16.79 |
| KRH08698 | Soybean | nucleus | 30.18 | 16.56 |
| KRG91651 | Soybean | nucleus | 30.47 | 16.35 |
| CDX77787 | Canola | nucleus | 29.59 | 15.58 |
| KRG96954 | Soybean | nucleus | 25.74 | 14.5 |
| KRH34074 | Soybean | nucleus | 24.85 | 14.46 |
| KRH68714 | Soybean | nucleus | 24.85 | 13.48 |
| KRH67857 | Soybean | nucleus | 23.08 | 13.4 |
| KRG96146 | Soybean | nucleus | 22.78 | 13.32 |
| KRH32666 | Soybean | nucleus | 23.08 | 13.13 |
| KRG92655 | Soybean | nucleus | 25.15 | 12.67 |
| KRH34733 | Soybean | nucleus | 19.23 | 11.99 |
| KRG92051 | Soybean | nucleus | 18.64 | 11.73 |
| KRH35147 | Soybean | nucleus | 3.85 | 4.56 |
Protein Annotations
| EMBL:ACUP02009215 | EnsemblPlants:KRH11595 | EnsemblPlantsGene:GLYMA_15G119000 | EntrezGene:100815105 | Gene3D:1.10.10.60 | InterPro:IPR017877 |
| InterPro:Myb-like_dom | ncoils:Coil | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF7 | PFAM:PF13837 | PFscan:PS50090 |
| ProteinID:KRH11595 | ProteinID:KRH11595.1 | SEG:seg | UniParc:UPI000233ABD5 | UniProt:K7MAW9 | MapMan:15.5.20 |
Description
hypothetical protein
Coordinates
chr15:+:9328462..9330770
Molecular Weight (calculated)
38596.5 Da
IEP (calculated)
6.744
GRAVY (calculated)
-0.951
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLFTGDHFP VPDHVAPFPD SGDLLFAADL LSHRHNPQKL RPIRSVPTAP IANPSPPPLS HDPIPSGSGH APCHESSLSF DAEDEDEDDD NSSASTKGHG
101: PRKKRRKMVR KLEDFAKDLV VKVMEKQEQM HKQLLEIIEN NERERIKREA AWKNEEMERI RKDEEARAQE NSRNLALISF IQNLLGHEIQ IPQQPAKPCS
201: KREEDEVEAS ARKELNNDPG DNRWPDVEVQ SLITVRTSLE HKFRLMGSKG TIWEEISEAM NGMGYNRSAK KCKEKWENIN KYYKRTIGSG KKRRQNSKTC
301: PYFDELDILY RKGLLSIGNA LSNTCGVPQI EVKELNET
101: PRKKRRKMVR KLEDFAKDLV VKVMEKQEQM HKQLLEIIEN NERERIKREA AWKNEEMERI RKDEEARAQE NSRNLALISF IQNLLGHEIQ IPQQPAKPCS
201: KREEDEVEAS ARKELNNDPG DNRWPDVEVQ SLITVRTSLE HKFRLMGSKG TIWEEISEAM NGMGYNRSAK KCKEKWENIN KYYKRTIGSG KKRRQNSKTC
301: PYFDELDILY RKGLLSIGNA LSNTCGVPQI EVKELNET
001: MELLAGDCRK RVGDDFEEDI NPFDGSDGGC GWMYGTRQMG SNGNDDALAT LADLASPPQK LKPIRCGVKL PSSSEDRHPL DILAGTLDRL PEMGFGCFEA
101: PLGSKIADVE ESGQLTRGFS KEEDDSLPPL QMEFQARNRI SWDGLSLSSS VDSSDSDSSP DVRKTVTGKR KRETRVKLEH FLEKLVGSMM KRQEKMHNQL
201: INVMEKMEVE RIRREEAWRQ QETERMTQNE EARKQEMARN LSLISFIRSV TGDEIEIPKQ CEFPQPLQQI LPEQCKDEKC ESAQREREIK FRYSSGSGSS
301: GRRWPQEEVQ ALISSRSDVE EKTGINKGAI WDEISARMKE RGYERSAKKC KEKWENMNKY YRRVTEGGQK QPEHSKTRSY FEKLGNFYKT ISSGEREK
101: PLGSKIADVE ESGQLTRGFS KEEDDSLPPL QMEFQARNRI SWDGLSLSSS VDSSDSDSSP DVRKTVTGKR KRETRVKLEH FLEKLVGSMM KRQEKMHNQL
201: INVMEKMEVE RIRREEAWRQ QETERMTQNE EARKQEMARN LSLISFIRSV TGDEIEIPKQ CEFPQPLQQI LPEQCKDEKC ESAQREREIK FRYSSGSGSS
301: GRRWPQEEVQ ALISSRSDVE EKTGINKGAI WDEISARMKE RGYERSAKKC KEKWENMNKY YRRVTEGGQK QPEHSKTRSY FEKLGNFYKT ISSGEREK
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FGJ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.