Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH18559 | Soybean | nucleus | 32.74 | 97.66 |
| KRH18561 | Soybean | nucleus | 61.55 | 95.68 |
| VIT_14s0066g02330.t01 | Wine grape | nucleus | 66.12 | 66.93 |
| Solyc02g087370.1.1 | Tomato | cytosol | 8.63 | 63.02 |
| CDX78604 | Canola | nucleus | 60.06 | 62.37 |
| Bra006276.1-P | Field mustard | nucleus | 59.84 | 62.33 |
| Solyc02g067570.2.1 | Tomato | nucleus | 59.77 | 62.17 |
| CDX70587 | Canola | nucleus | 60.06 | 62.14 |
| CDX91007 | Canola | nucleus | 58.35 | 61.83 |
| Solyc02g087360.2.1 | Tomato | nucleus | 58.99 | 61.58 |
| Solyc02g087380.1.1 | Tomato | nucleus, plastid | 5.99 | 61.31 |
| Bra023501.1-P | Field mustard | nucleus | 58.42 | 61.3 |
| CDX85568 | Canola | nucleus | 58.42 | 61.3 |
| AT5G15020.1 | Thale cress | nucleus | 59.34 | 60.86 |
| PGSC0003DMT400003538 | Potato | nucleus | 58.56 | 60.5 |
| AT3G01320.1 | Thale cress | mitochondrion, nucleus | 58.49 | 59.77 |
| Bra040510.1-P | Field mustard | mitochondrion, nucleus | 55.78 | 58.14 |
| CDY28683 | Canola | mitochondrion, nucleus | 55.28 | 57.58 |
| KRG99216 | Soybean | nucleus | 54.56 | 55.39 |
| KRH45772 | Soybean | nucleus | 54.99 | 55.27 |
| KRH69432 | Soybean | nucleus | 56.06 | 54.97 |
| KRH74716 | Soybean | nucleus | 50.78 | 54.14 |
| KRG99215 | Soybean | cytosol | 4.85 | 49.63 |
| PGSC0003DMT400003545 | Potato | cytosol, mitochondrion | 15.98 | 43.75 |
| KRH18551 | Soybean | cytosol, nucleus, peroxisome | 6.7 | 43.52 |
| KRH45776 | Soybean | nucleus | 28.6 | 43.49 |
| Solyc02g087390.1.1 | Tomato | cytosol | 14.91 | 41.06 |
| KRH45778 | Soybean | cytosol | 18.4 | 40.5 |
Protein Annotations
| Gene3D:1.20.1160.11 | EntrezGene:100807181 | MapMan:12.3.2.4.2 | EMBL:ACUP02011558 | ncoils:Coil | EnsemblPlantsGene:GLYMA_19G016300 |
| GO:GO:0000118 | GO:GO:0000122 | GO:GO:0000785 | GO:GO:0001106 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004407 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016575 | GO:GO:0016787 |
| GO:GO:0019538 | InterPro:HDAC_interact_dom | UniProt:I1N5Z6 | InterPro:IPR003822 | EnsemblPlants:KRG93437 | ProteinID:KRG93437 |
| ProteinID:KRG93437.1 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 |
| PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C |
| UniParc:UPI00023D8EEE | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr19:-:1611333..1621578
Molecular Weight (calculated)
158811.0 Da
IEP (calculated)
5.467
GRAVY (calculated)
-0.820
Length
1402 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRARDDMYP ASQFKRPFAS SRADSYGQNQ VPGSGGGGGG GGGGGSGNGG GVGGGANASQ KLTTNDALSY LKEVKDMFQD QREKYDMFLE VMKDFKAQRT
0101: DTAGVIKRVK ELFKGHNNLI FGFNTFLPKG YEITLDEDEA PPKKTVEFEE AISFVNKIKK RFLSDEHVYK SFLDILNMYR KEHKDIGEVY SEVATLFKDH
0201: RDLLEEFTRF LPDTSAAPST QHAPYIRNSL QRFNERGSMA PMIRQMPADK AQRYRRDRLP SHDRDMSAER PELDDDKTMM NIHKEQRKRE SRERRMRDQD
0301: EREHDLDNNR DLNLQRFPDK KKSVKKAEGF GMASDFASYE DKDTLNSPGM YSQAFSFCEK VKGKLSSSDD YQTFLKCLHI FSNGIIKRND LQNLVTDLLG
0401: KHSDLMDEFN DFLERCENID GFLAGVMSKK SLSTDAHLSR SSKLEEKDKE HKRDLDGAKE KERYREKYMG KSIQELDLSD CKRCTPSYRL LPADYPIPTA
0501: SQRSELGAQV LNDHWVSVTS GSEDYSFKHM RRNQYEESLF RCEDDRYELD MLLESVSSAA KKAEELYNSI NENKISVETL NRIEDHFTVL NLRCIERLYG
0601: DHGLDVIDIL RKNPTHALPV ILTRLKQKQE EWSKCRSDFN KVWAEIYAKN HYKSLDHRSF YFKQQDSKNL STKSLVTEIK EIKEKQQKED DIIQSIAAGN
0701: KQPLIPHLEF EYSDVGIHED LYKLVRYSCE ELFSSKELLN KIMRLWSTFL EPMLGVPSQS HGTERAEDRK TGHNVRNFGA PNVGGDGSPR EDTLSINSRV
0801: PKSDKNEADG RVTEVKNVHW TTVAASNDKE NGSVGGEIVS RDDPLMDKGQ KNVECNDKAS GFSKQFASGE EGAKNNVSIA IRGENSLNRT NLDASSGCAL
0901: TPSQPTDVDD SVSKSQGVNV PSVEGCDMAT PVPVVNGVLS ESSKVKTHDE SAGPCKIEKE EGELSPIGDS EEDNYVAYGD SNVQSMAKSK HNVEKRKYQS
1001: RNGEDESCPE AGGDNDADAD DEDSENVSEA GEDVSGSESA GDECFREDHE EEEDIEHDDV DGKAESEGEA EGICDAQVGG DGTSLPLSER FLSSVKPLTK
1101: HVSAVSFVEE MKDSRVFYGN DDFYVLFRLH QALYERILSA KTHSMSAEMK WKAKDASSPD PYSRFMNALY NLLDGSAENA KFEDECRAII GNQSYVLFTL
1201: DKLIYKLVRQ LQTVATDEVD NKLLQLYEYE KSRKSGKLND SVYHANAHVI LHEDNIYRLQ CSSTPSRLFI QLMDNMNEKP ELFAVSIDPN FSFYLHSDFL
1301: SVFPNKKEPH GIILHRNKRQ YGNLDELSAI CSAMEGVKVV NGLECKIACS SSKISYVLDT QDFFFRPRKK RRTPSGTTTS QSRRDREERF RKLLAHSQFV
1401: SS
0101: DTAGVIKRVK ELFKGHNNLI FGFNTFLPKG YEITLDEDEA PPKKTVEFEE AISFVNKIKK RFLSDEHVYK SFLDILNMYR KEHKDIGEVY SEVATLFKDH
0201: RDLLEEFTRF LPDTSAAPST QHAPYIRNSL QRFNERGSMA PMIRQMPADK AQRYRRDRLP SHDRDMSAER PELDDDKTMM NIHKEQRKRE SRERRMRDQD
0301: EREHDLDNNR DLNLQRFPDK KKSVKKAEGF GMASDFASYE DKDTLNSPGM YSQAFSFCEK VKGKLSSSDD YQTFLKCLHI FSNGIIKRND LQNLVTDLLG
0401: KHSDLMDEFN DFLERCENID GFLAGVMSKK SLSTDAHLSR SSKLEEKDKE HKRDLDGAKE KERYREKYMG KSIQELDLSD CKRCTPSYRL LPADYPIPTA
0501: SQRSELGAQV LNDHWVSVTS GSEDYSFKHM RRNQYEESLF RCEDDRYELD MLLESVSSAA KKAEELYNSI NENKISVETL NRIEDHFTVL NLRCIERLYG
0601: DHGLDVIDIL RKNPTHALPV ILTRLKQKQE EWSKCRSDFN KVWAEIYAKN HYKSLDHRSF YFKQQDSKNL STKSLVTEIK EIKEKQQKED DIIQSIAAGN
0701: KQPLIPHLEF EYSDVGIHED LYKLVRYSCE ELFSSKELLN KIMRLWSTFL EPMLGVPSQS HGTERAEDRK TGHNVRNFGA PNVGGDGSPR EDTLSINSRV
0801: PKSDKNEADG RVTEVKNVHW TTVAASNDKE NGSVGGEIVS RDDPLMDKGQ KNVECNDKAS GFSKQFASGE EGAKNNVSIA IRGENSLNRT NLDASSGCAL
0901: TPSQPTDVDD SVSKSQGVNV PSVEGCDMAT PVPVVNGVLS ESSKVKTHDE SAGPCKIEKE EGELSPIGDS EEDNYVAYGD SNVQSMAKSK HNVEKRKYQS
1001: RNGEDESCPE AGGDNDADAD DEDSENVSEA GEDVSGSESA GDECFREDHE EEEDIEHDDV DGKAESEGEA EGICDAQVGG DGTSLPLSER FLSSVKPLTK
1101: HVSAVSFVEE MKDSRVFYGN DDFYVLFRLH QALYERILSA KTHSMSAEMK WKAKDASSPD PYSRFMNALY NLLDGSAENA KFEDECRAII GNQSYVLFTL
1201: DKLIYKLVRQ LQTVATDEVD NKLLQLYEYE KSRKSGKLND SVYHANAHVI LHEDNIYRLQ CSSTPSRLFI QLMDNMNEKP ELFAVSIDPN FSFYLHSDFL
1301: SVFPNKKEPH GIILHRNKRQ YGNLDELSAI CSAMEGVKVV NGLECKIACS SSKISYVLDT QDFFFRPRKK RRTPSGTTTS QSRRDREERF RKLLAHSQFV
1401: SS
0001: MKRIRDDIYA TGSQFKRPLG SSRGESYEQS PITGGGSIGE GGINTQKLTT DDALTYLKEV KEMFQDQRDK YDMFLEVMKD FKAQKTDTSG VISRVKELFK
0101: GHNNLIFGFN TFLPKGFEIT LDDVEAPSKK TVEFEEAISF VNKIKTRFQH NELVYKSFLE ILNMYRKDNK DITEVYNEVS TLFEDHSDLL EEFTRFLPDS
0201: LAPHTEAQLL RSQAQRYDDR GSGPPLVRRM FMEKDRRRER TVASRGDRDH SVDRSDLNDD KSMVKMHRDQ RKRVDKDNRE RRSRDLEDGE AEQDNLQHFS
0301: EKRKSSRRME GFEAYSGPAS HSEKNNLKSM YNQAFLFCEK VKERLCSQDD YQAFLKCLNM FSNGIIQRKD LQNLVSDVLG KFPDLMDEFN QFFERCESID
0401: GFQHLAGVMS KKSLGSEENL SRSVKGEEKD REHKRDVEAA KEKERSKDKY MGKSIQELDL SDCERCTPSY RLLPPDYPIP SVRHRQKSGA AVLNDHWVSV
0501: TSGSEDYSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEELLN IIIDKKISFE GSFRIEDHFT ALNLRCIERL YGDHGLDVTD LIRKNPAAAL
0601: PVILTRLKQK QDEWTKCREG FNVVWADVYA KNHYKSLDHR SFYFKQQDSK NLSAKALVSE VKDLKEKSQK EDDVVLSISA GYRQPIIPHL EYDYLDRAIH
0701: EDLFKLVQFS CEEICSTKEQ TGKVLKLWAN FLELMLDVAP RAKGSDSVED VVETQHQRAF TSGEANESSD AISLVSRQLK FATNGDVHAS SGVSKHGETG
0801: LLNRDSSGKE NLKDGDLANK DVATCAEKPQ KDQEIGNGAA KRSGDVDERV ATSSSSFPSG VENNNGKVGS RDSSGSRGIL SKPSEAIDKV DSIQHTQGVD
0901: IGRIIVLGNG LQSDTSKANS NYDESGGPSK IEKEEGELSP VGDSEDNFVV YEDRELKATA KTEHSVEAEG ENDEDADDED GDDASEAGED ASGTESIGDE
1001: CSQDDNGVEE EGEHDEIDGK AESEGEAEGM ESHLIEDKGL FPSSERVLLS VKPLSKHIAA AALVDEKKKD SRVFYGNDDF YVLFRLHRIL YERILSAKTY
1101: CSGSEMKLRN TKDTCSPDPY ARFMNALFSL LNGSAENSKF EDECRAIIGN QSYVLFTLEK LIYKLVKQLQ AVVADDMDNK LLQLYEYENS RRPGRVFDSV
1201: YYENARILLH EENIYRLECS SSPSRLSIQL MDNIIEKPDA YAVSMEPTFT SYLQNEFLSN SSGKKELQDI VLQRNMRGYN GLDDLAVACK AMEGVQVING
1301: LECKMSCSSY KISYVLDTED FFHRKKKQKK SNNLSLAKLS QNRIARFHKF LSASR
0101: GHNNLIFGFN TFLPKGFEIT LDDVEAPSKK TVEFEEAISF VNKIKTRFQH NELVYKSFLE ILNMYRKDNK DITEVYNEVS TLFEDHSDLL EEFTRFLPDS
0201: LAPHTEAQLL RSQAQRYDDR GSGPPLVRRM FMEKDRRRER TVASRGDRDH SVDRSDLNDD KSMVKMHRDQ RKRVDKDNRE RRSRDLEDGE AEQDNLQHFS
0301: EKRKSSRRME GFEAYSGPAS HSEKNNLKSM YNQAFLFCEK VKERLCSQDD YQAFLKCLNM FSNGIIQRKD LQNLVSDVLG KFPDLMDEFN QFFERCESID
0401: GFQHLAGVMS KKSLGSEENL SRSVKGEEKD REHKRDVEAA KEKERSKDKY MGKSIQELDL SDCERCTPSY RLLPPDYPIP SVRHRQKSGA AVLNDHWVSV
0501: TSGSEDYSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEELLN IIIDKKISFE GSFRIEDHFT ALNLRCIERL YGDHGLDVTD LIRKNPAAAL
0601: PVILTRLKQK QDEWTKCREG FNVVWADVYA KNHYKSLDHR SFYFKQQDSK NLSAKALVSE VKDLKEKSQK EDDVVLSISA GYRQPIIPHL EYDYLDRAIH
0701: EDLFKLVQFS CEEICSTKEQ TGKVLKLWAN FLELMLDVAP RAKGSDSVED VVETQHQRAF TSGEANESSD AISLVSRQLK FATNGDVHAS SGVSKHGETG
0801: LLNRDSSGKE NLKDGDLANK DVATCAEKPQ KDQEIGNGAA KRSGDVDERV ATSSSSFPSG VENNNGKVGS RDSSGSRGIL SKPSEAIDKV DSIQHTQGVD
0901: IGRIIVLGNG LQSDTSKANS NYDESGGPSK IEKEEGELSP VGDSEDNFVV YEDRELKATA KTEHSVEAEG ENDEDADDED GDDASEAGED ASGTESIGDE
1001: CSQDDNGVEE EGEHDEIDGK AESEGEAEGM ESHLIEDKGL FPSSERVLLS VKPLSKHIAA AALVDEKKKD SRVFYGNDDF YVLFRLHRIL YERILSAKTY
1101: CSGSEMKLRN TKDTCSPDPY ARFMNALFSL LNGSAENSKF EDECRAIIGN QSYVLFTLEK LIYKLVKQLQ AVVADDMDNK LLQLYEYENS RRPGRVFDSV
1201: YYENARILLH EENIYRLECS SSPSRLSIQL MDNIIEKPDA YAVSMEPTFT SYLQNEFLSN SSGKKELQDI VLQRNMRGYN GLDDLAVACK AMEGVQVING
1301: LECKMSCSSY KISYVLDTED FFHRKKKQKK SNNLSLAKLS QNRIARFHKF LSASR
Arabidopsis Description
SNL2Paired amphipathic helix protein Sin3-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFQ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.