Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G56860.1 | KRG93437 | AT3G01320.1 | 19962994 |
| AT5G56860.1 | KRH18559 | AT3G01320.1 | 19962994 |
| AT5G56860.1 | KRH18561 | AT3G01320.1 | 19962994 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH19153 | Soybean | nucleus | 87.58 | 89.81 |
| KRH12382 | Soybean | nucleus | 59.32 | 60.63 |
| KRH37384 | Soybean | nucleus | 57.76 | 55.19 |
| KRH68462 | Soybean | cytosol | 12.73 | 51.25 |
| KRG96744 | Soybean | cytosol, mitochondrion, nucleus | 10.25 | 39.76 |
| GSMUA_Achr8P24880_001 | Banana | nucleus | 26.09 | 38.53 |
| KRH02314 | Soybean | nucleus | 16.46 | 37.86 |
| Bra035633.1-P | Field mustard | nucleus | 32.61 | 34.88 |
| KRH50773 | Soybean | nucleus | 16.46 | 33.54 |
| CDX88593 | Canola | nucleus | 36.34 | 32.96 |
| KRH15535 | Soybean | nucleus | 31.06 | 32.68 |
| KRH61505 | Soybean | nucleus | 29.5 | 32.53 |
| CDY32755 | Canola | nucleus | 38.2 | 31.78 |
| Bra002788.1-P | Field mustard | nucleus | 38.2 | 31.78 |
| CDY20709 | Canola | nucleus | 38.82 | 31.73 |
| AT5G56860.1 | Thale cress | nucleus | 39.13 | 31.66 |
| CDY67979 | Canola | nucleus | 38.51 | 31.63 |
| AT4G26150.1 | Thale cress | cytosol | 33.85 | 30.97 |
| KRH05458 | Soybean | nucleus | 29.19 | 30.72 |
| CDY32891 | Canola | nucleus | 36.96 | 30.67 |
| CDY65439 | Canola | nucleus | 36.34 | 30.47 |
| Bra006851.1-P | Field mustard | nucleus, plastid | 36.34 | 30.47 |
| CDX94365 | Canola | nucleus | 33.85 | 30.28 |
| CDY42753 | Canola | nucleus | 34.47 | 30.0 |
| CDY42752 | Canola | nucleus | 34.47 | 30.0 |
| Bra026461.1-P | Field mustard | nucleus | 33.54 | 30.0 |
| CDX89358 | Canola | nucleus | 33.23 | 29.72 |
| CDY67546 | Canola | nucleus | 34.47 | 29.52 |
| TraesCS6D01G173000.1 | Wheat | cytosol | 30.75 | 28.95 |
| TraesCS6A01G185900.1 | Wheat | cytosol | 30.75 | 28.95 |
| Bra019118.1-P | Field mustard | nucleus | 34.47 | 28.61 |
| Os02t0220400-01 | Rice | nucleus | 30.75 | 28.05 |
| HORVU6Hr1G039720.2 | Barley | cytosol | 29.81 | 27.91 |
| Zm00001d016361_P001 | Maize | nucleus | 31.99 | 27.84 |
| TraesCS6B01G214900.1 | Wheat | cytosol | 29.5 | 27.78 |
| KXG29816 | Sorghum | nucleus | 32.3 | 26.87 |
| Zm00001d046354_P001 | Maize | nucleus | 30.12 | 26.22 |
| TraesCS7D01G359900.1 | Wheat | nucleus | 29.19 | 26.18 |
| TraesCS7A01G363100.1 | Wheat | nucleus | 28.88 | 26.12 |
| HORVU7Hr1G086810.1 | Barley | nucleus | 28.88 | 25.83 |
| TraesCS7B01G264800.1 | Wheat | nucleus | 28.88 | 25.76 |
| EER88552 | Sorghum | nucleus | 30.75 | 25.65 |
| KRH30068 | Soybean | plastid | 12.42 | 25.64 |
| Os06t0571800-02 | Rice | nucleus | 26.4 | 24.5 |
| KRH69915 | Soybean | nucleus | 18.94 | 24.21 |
| KRH28681 | Soybean | nucleus | 18.32 | 24.08 |
| KRH08269 | Soybean | nucleus | 18.63 | 23.9 |
| KRH43324 | Soybean | nucleus | 7.76 | 18.38 |
Protein Annotations
| EntrezGene:100810698 | MapMan:15.5.1.3 | Gene3D:3.30.50.10 | EMBL:ACUP02010315 | EnsemblPlantsGene:GLYMA_17G055200 | GO:GO:0000977 |
| GO:GO:0001085 | GO:GO:0001228 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003682 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005667 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006366 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 |
| GO:GO:0045944 | GO:GO:0046872 | UniProt:I1MSH4 | InterPro:IPR000679 | InterPro:IPR013088 | EnsemblPlants:KRH02716 |
| ProteinID:KRH02716 | ProteinID:KRH02716.1 | PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 | PANTHER:PTHR10071 |
| PANTHER:PTHR10071:SF191 | SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI000233E0DA | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr17:+:4203194..4205343
Molecular Weight (calculated)
36172.5 Da
IEP (calculated)
10.034
GRAVY (calculated)
-0.915
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MIPAYRHSVS SVMPLDLNED QNHEFFSPTH HPSSSFSSLS SYPILFNPPN QDQEARSYYW EPTKQYLPSH EEETEKIIPS SGSWDHSVAE SEHNKATVWK
101: KAEERNENLE SVAAEDGSLK WMPAKMRIMR KMLVSDQTDT YTNSDNNTTH KFDDQKQQLS SPLGTDNSSS NNYSNHSNNT VRVCSDCHTT KTPLWRSGPR
201: GPKSLCNACG IRQRKARRAM AAAAASASGN GTVIVEAKKS VKGRNKLQKK KEKKTRTEGA AQMKKKRKLG VGSAKASQSR NKFGFEDLTL RLRKNLAMHQ
301: VFPQDEKEAA ILLMALSYGL VH
101: KAEERNENLE SVAAEDGSLK WMPAKMRIMR KMLVSDQTDT YTNSDNNTTH KFDDQKQQLS SPLGTDNSSS NNYSNHSNNT VRVCSDCHTT KTPLWRSGPR
201: GPKSLCNACG IRQRKARRAM AAAAASASGN GTVIVEAKKS VKGRNKLQKK KEKKTRTEGA AQMKKKRKLG VGSAKASQSR NKFGFEDLTL RLRKNLAMHQ
301: VFPQDEKEAA ILLMALSYGL VH
001: MGSNFHYTID LNEDQNHQPF FASLGSSLHH HLQQQQQQQQ HFHHQASSNP SSLMSPSLSY FPFLINSRQD QVYVGYNNNT FHDVLDTHIS QPLETKNFVS
101: DGGSSSSDQM VPKKETRLKL TIKKKDNHQD QTDLPQSPIK DMTGTNSLKW ISSKVRLMKK KKAIITTSDS SKQHTNNDQS SNLSNSERQN GYNNDCVIRI
201: CSDCNTTKTP LWRSGPRGPK SLCNACGIRQ RKARRAAMAT ATATAVSGVS PPVMKKKMQN KNKISNGVYK ILSPLPLKVN TCKRMITLEE TALAEDLETQ
301: SNSTMLSSSD NIYFDDLALL LSKSSAYQQV FPQDEKEAAI LLMALSHGMV HG
101: DGGSSSSDQM VPKKETRLKL TIKKKDNHQD QTDLPQSPIK DMTGTNSLKW ISSKVRLMKK KKAIITTSDS SKQHTNNDQS SNLSNSERQN GYNNDCVIRI
201: CSDCNTTKTP LWRSGPRGPK SLCNACGIRQ RKARRAAMAT ATATAVSGVS PPVMKKKMQN KNKISNGVYK ILSPLPLKVN TCKRMITLEE TALAEDLETQ
301: SNSTMLSSSD NIYFDDLALL LSKSSAYQQV FPQDEKEAAI LLMALSHGMV HG
Arabidopsis Description
GATA22Putative GATA transcription factor 22 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZI6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.