Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20709 | Canola | nucleus | 81.16 | 81.98 |
| CDY32891 | Canola | nucleus | 79.15 | 81.19 |
| CDY67979 | Canola | nucleus | 79.9 | 81.12 |
| CDY32755 | Canola | nucleus | 78.64 | 80.88 |
| Bra002788.1-P | Field mustard | nucleus | 78.64 | 80.88 |
| Bra035633.1-P | Field mustard | nucleus | 61.06 | 80.73 |
| CDY65439 | Canola | nucleus | 77.89 | 80.73 |
| Bra006851.1-P | Field mustard | nucleus, plastid | 76.38 | 79.17 |
| CDX88593 | Canola | nucleus | 70.6 | 79.15 |
| AT4G26150.1 | Thale cress | cytosol | 48.99 | 55.4 |
| KRH19153 | Soybean | nucleus | 31.91 | 40.45 |
| KRH02716 | Soybean | nucleus | 31.66 | 39.13 |
| AT5G49300.1 | Thale cress | cytosol | 13.07 | 37.41 |
| KRH12382 | Soybean | nucleus | 29.15 | 36.83 |
| GSMUA_Achr8P24880_001 | Banana | nucleus | 19.85 | 36.24 |
| AT5G26930.1 | Thale cress | cytosol | 10.3 | 34.17 |
| AT3G06740.1 | Thale cress | nucleus | 12.56 | 33.56 |
| KRH37384 | Soybean | nucleus | 27.89 | 32.94 |
| TraesCS7D01G359900.1 | Wheat | nucleus | 26.63 | 29.53 |
| TraesCS7A01G363100.1 | Wheat | nucleus | 26.38 | 29.49 |
| HORVU7Hr1G086810.1 | Barley | nucleus | 26.13 | 28.89 |
| TraesCS7B01G264800.1 | Wheat | nucleus | 25.63 | 28.25 |
| Zm00001d046354_P001 | Maize | nucleus | 25.88 | 27.84 |
| EER88552 | Sorghum | nucleus | 26.88 | 27.72 |
| TraesCS6A01G185900.1 | Wheat | cytosol | 23.12 | 26.9 |
| Zm00001d016361_P001 | Maize | nucleus | 24.87 | 26.76 |
| Os02t0220400-01 | Rice | nucleus | 23.62 | 26.63 |
| TraesCS6D01G173000.1 | Wheat | cytosol | 22.86 | 26.61 |
| Os06t0571800-02 | Rice | nucleus | 23.12 | 26.51 |
| HORVU6Hr1G039720.2 | Barley | cytosol | 22.86 | 26.45 |
| TraesCS6B01G214900.1 | Wheat | cytosol | 22.36 | 26.02 |
| KXG29816 | Sorghum | nucleus | 24.12 | 24.81 |
| AT3G16870.1 | Thale cress | nucleus | 11.81 | 24.74 |
| AT4G16141.1 | Thale cress | cytosol | 11.31 | 22.84 |
| AT4G36620.1 | Thale cress | cytosol | 11.56 | 21.8 |
| AT2G18380.1 | Thale cress | cytosol | 10.05 | 19.23 |
| AT3G50870.1 | Thale cress | cytosol | 12.56 | 16.95 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | EntrezGene:835788 | ProteinID:AED96815.1 | ArrayExpress:AT5G56860 | EnsemblPlantsGene:AT5G56860 |
| RefSeq:AT5G56860 | TAIR:AT5G56860 | RefSeq:AT5G56860-TAIR-G | EnsemblPlants:AT5G56860.1 | TAIR:AT5G56860.1 | EMBL:AY065074 |
| Unigene:At.28597 | ProteinID:BAA97205.1 | EMBL:BT020488 | EMBL:BT025970 | Symbol:GNC | GO:GO:0000003 |
| GO:GO:0000977 | GO:GO:0001085 | GO:GO:0001228 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003682 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005667 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006366 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0007623 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009658 |
| GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009735 | GO:GO:0009736 | GO:GO:0009739 | GO:GO:0009740 |
| GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009910 | GO:GO:0009938 | GO:GO:0009987 | GO:GO:0010029 |
| GO:GO:0010151 | GO:GO:0010187 | GO:GO:0010255 | GO:GO:0010380 | GO:GO:0010468 | GO:GO:0016043 |
| GO:GO:0019725 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0043610 | GO:GO:0044212 | GO:GO:0045944 |
| GO:GO:0046872 | GO:GO:0051171 | GO:GO:0080050 | GO:GO:0090693 | GO:GO:1902326 | GO:GO:2000028 |
| InterPro:IPR000679 | InterPro:IPR013088 | RefSeq:NP_200497.1 | PFAM:PF00320 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0006340 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009049 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020137 | PO:PO:0025022 | ScanProsite:PS00344 |
| PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF306 | UniProt:Q1EBW4 | UniProt:Q5HZ36 | SMART:SM00401 |
| SUPFAM:SSF57716 | UniParc:UPI00000A779A | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg | : |
Description
GATA21GATA transcription factor 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5HZ36]
Coordinates
chr5:-:22989216..22991530
Molecular Weight (calculated)
44842.3 Da
IEP (calculated)
8.949
GRAVY (calculated)
-0.963
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSNFHYSID LNEDQNHHEQ PFFYPLGSSS SLHHHHHHHH HQVPSNSSSS SSSISSLSSY LPFLINSQED QHVAYNNTYH ADHLHLSQPL KAKMFVANGG
101: SSACDHMVPK KETRLKLTIR KKDHEDQPHP LHQNPTKPDS DSDKWLMSPK MRLIKKTITN NKQLIDQTNN NNHKESDHYP LNHKTNFDED HHEDLNFKNV
201: LTRKTTAATT ENRYNTINEN GYSNNNGVIR VCSDCNTTKT PLWRSGPRGP KSLCNACGIR QRKARRAAMA AAAAAGDQEV AVAPRVQQLP LKKKLQNKKK
301: RSNGGEKYNH SPPMVAKAKK CKIKEEEEKE MEAETVAGDS EISKSTTSSN SSISSNKFCF DDLTIMLSKS SAYQQVFPQD EKEAAVLLMA LSYGMVHG
101: SSACDHMVPK KETRLKLTIR KKDHEDQPHP LHQNPTKPDS DSDKWLMSPK MRLIKKTITN NKQLIDQTNN NNHKESDHYP LNHKTNFDED HHEDLNFKNV
201: LTRKTTAATT ENRYNTINEN GYSNNNGVIR VCSDCNTTKT PLWRSGPRGP KSLCNACGIR QRKARRAAMA AAAAAGDQEV AVAPRVQQLP LKKKLQNKKK
301: RSNGGEKYNH SPPMVAKAKK CKIKEEEEKE MEAETVAGDS EISKSTTSSN SSISSNKFCF DDLTIMLSKS SAYQQVFPQD EKEAAVLLMA LSYGMVHG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.