Factsheet for Os06t0571800-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G359900.1	Wheat	nucleus	63.4	61.28
TraesCS7A01G363100.1	Wheat	nucleus	62.82	61.24
TraesCS7B01G264800.1	Wheat	nucleus	63.11	60.66
HORVU7Hr1G086810.1	Barley	nucleus	62.82	60.56
Zm00001d046354_P001	Maize	nucleus	60.23	56.49
EER88552	Sorghum	nucleus	61.1	54.92
GSMUA_Achr7P09030_001	Banana	nucleus	19.88	44.23
Os02t0220400-01	Rice	nucleus	44.96	44.19
GSMUA_Achr2P16730_001	Banana	nucleus	20.46	34.13
Os01t0976800-01	Rice	nucleus	13.26	32.39
VIT_04s0008g01290.t01	Wine grape	plastid	28.24	32.03
VIT_11s0016g02210.t01	Wine grape	nucleus, plastid	27.67	31.07
Os01t0343300-01	Rice	nucleus	11.24	29.77
Solyc07g038160.2.1	Tomato	nucleus	21.04	27.44
KRH19153	Soybean	nucleus	23.92	26.43
AT4G26150.1	Thale cress	cytosol	26.8	26.42
KRH02716	Soybean	nucleus	24.5	26.4
Bra035633.1-P	Field mustard	nucleus	22.77	26.25
PGSC0003DMT400011449	Potato	nucleus	21.04	25.52
KRH12382	Soybean	nucleus	22.48	24.76
KRH61505	Soybean	nucleus	20.46	24.32
CDX94365	Canola	nucleus	24.78	23.89
CDY42753	Canola	nucleus	25.36	23.78
CDY42752	Canola	nucleus	25.36	23.78
CDY20709	Canola	nucleus	26.8	23.6
CDY67979	Canola	nucleus	26.51	23.47
CDX88593	Canola	nucleus	23.92	23.38
PGSC0003DMT400000761	Potato	nucleus	19.31	23.34
AT5G56860.1	Thale cress	nucleus	26.51	23.12
Bra002788.1-P	Field mustard	nucleus	25.65	23.0
CDY32755	Canola	nucleus	25.65	23.0
CDY32891	Canola	nucleus	25.65	22.94
CDY67546	Canola	nucleus	24.78	22.87
Bra026461.1-P	Field mustard	nucleus	23.63	22.78
Bra019118.1-P	Field mustard	nucleus	25.36	22.68
CDX89358	Canola	nucleus	23.34	22.5
KRH37384	Soybean	nucleus	21.61	22.26
KRH15535	Soybean	nucleus	19.6	22.22
Solyc12g008830.1.1	Tomato	nucleus	18.73	22.18
CDY65439	Canola	nucleus	24.5	22.14
Bra006851.1-P	Field mustard	nucleus, plastid	24.5	22.14
KRH05458	Soybean	nucleus	19.31	21.9
Os05t0155400-01	Rice	mitochondrion, nucleus, vacuole	10.66	19.17
Os01t0662800-00	Rice	cytosol, extracellular, nucleus	11.24	16.12
Os05t0578900-01	Rice	nucleus	12.68	15.77
Bra001644.1-P	Field mustard	nucleus	6.63	15.75
Os05t0567900-00	Rice	cytosol, extracellular, plastid	11.24	15.6

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	ProteinID:BAD61831.1	ProteinID:BAD61935.1	ProteinID:BAF19831.1	ProteinID:BAS98321.1
GO:GO:0000977	GO:GO:0001085	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003682	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355	GO:GO:0006366
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154
GO:GO:0043565	GO:GO:0045944	GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088	EnsemblPlantsGene:Os06g0571800
EnsemblPlants:Os06t0571800-02	PFAM:PF00320	ScanProsite:PS00344	PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF287
UniProt:Q5Z624	SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI0000450687	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA
SEG:seg	:	:	:	:	:

Description

GATA TRANSCRIPTION FACTOR 16Similar to GATA transcription factor 20. (Os06t0571800-01);Similar to GATA transcription factor 3 (AtGATA-3). (Os06t0571800-02)

Coordinates

chr6:+:22155054..22157042

Molecular Weight (calculated)

36388.2 Da

IEP (calculated)

9.146

GRAVY (calculated)

-0.323

Length

347 amino acids

Sequence
(BLAST)

001: MSTIYMSQLS AALPLMEGEH HHHHQDHHQG HFQAFSLQPK DPPVLFPFVI SRRSSSSSPS DSTTLSYGSD HHLTQQQQHQ HQAMLEPQNM IGGSSAGIFA
101: TPFPTVKSIR DDMIERSQFD PYDTEKLQAS CGLAKVVAGG KWSAVPAAKM KITRKMGEPS SGVTGGAATT VAPKKPRRRP AQAYEDHGHG GAMGQAFGVI
201: RVCSDCNTTK TPLWRSGPCG PKSLCNACGI RQRKARRAMM ASGLPASPNA AGPKAAAHSG ATNAAAAAAM EETAESATVA PPPAPTTRGG TLVDSIGLSW
301: SKTHAAATAS CSFRPSPVAP GFAAAVQDEI TDAAMLLMTL SCGLVRS

Best Arabidopsis Sequence Match ( AT5G56860.1 )
(BLAST)

001: MDSNFHYSID LNEDQNHHEQ PFFYPLGSSS SLHHHHHHHH HQVPSNSSSS SSSISSLSSY LPFLINSQED QHVAYNNTYH ADHLHLSQPL KAKMFVANGG
101: SSACDHMVPK KETRLKLTIR KKDHEDQPHP LHQNPTKPDS DSDKWLMSPK MRLIKKTITN NKQLIDQTNN NNHKESDHYP LNHKTNFDED HHEDLNFKNV
201: LTRKTTAATT ENRYNTINEN GYSNNNGVIR VCSDCNTTKT PLWRSGPRGP KSLCNACGIR QRKARRAAMA AAAAAGDQEV AVAPRVQQLP LKKKLQNKKK
301: RSNGGEKYNH SPPMVAKAKK CKIKEEEEKE MEAETVAGDS EISKSTTSSN SSISSNKFCF DDLTIMLSKS SAYQQVFPQD EKEAAVLLMA LSYGMVHG

Arabidopsis Description

GATA21GATA transcription factor 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5HZ36]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.