Factsheet for PGSC0003DMT400000761

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g008830.1.1	Tomato	nucleus	91.64	89.76
PGSC0003DMT400011449	Potato	nucleus	54.36	54.55
GSMUA_Achr2P15750_001	Banana	plastid	20.56	44.36
GSMUA_Achr10P...	Banana	mitochondrion	28.92	41.5
PGSC0003DMT400081417	Potato	nucleus	14.98	40.57
PGSC0003DMT400063771	Potato	nucleus	17.77	33.77
VIT_04s0008g01290.t01	Wine grape	plastid	35.89	33.66
GSMUA_Achr4P30820_001	Banana	nucleus	29.62	31.37
PGSC0003DMT400006011	Potato	nucleus	17.77	30.54
PGSC0003DMT400011779	Potato	nucleus	17.77	30.36
KRH61505	Soybean	nucleus	27.18	26.71
PGSC0003DMT400060241	Potato	nucleus	17.77	25.89
KRH15535	Soybean	nucleus	25.44	23.86
KRH05458	Soybean	nucleus	25.09	23.53
HORVU6Hr1G039720.2	Barley	cytosol	27.87	23.26
TraesCS6A01G185900.1	Wheat	cytosol	27.53	23.1
TraesCS6D01G173000.1	Wheat	cytosol	27.18	22.81
TraesCS7A01G363100.1	Wheat	nucleus	28.22	22.75
Os02t0220400-01	Rice	nucleus	27.87	22.66
TraesCS7D01G359900.1	Wheat	nucleus	28.22	22.56
HORVU7Hr1G086810.1	Barley	nucleus	27.87	22.22
TraesCS7B01G264800.1	Wheat	nucleus	27.87	22.16
TraesCS6B01G214900.1	Wheat	cytosol	26.13	21.93
Zm00001d016361_P001	Maize	nucleus	27.87	21.62
Zm00001d046354_P001	Maize	nucleus	27.18	21.08
Bra001644.1-P	Field mustard	nucleus	10.45	20.55
EER88552	Sorghum	nucleus	27.53	20.47
KXG29816	Sorghum	nucleus	27.53	20.41
PGSC0003DMT400009031	Potato	plastid	16.72	19.43
Os06t0571800-02	Rice	nucleus	23.34	19.31
PGSC0003DMT400040074	Potato	nucleus	14.98	17.34

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088
UniProt:M0ZH97	PFAM:PF00320	EnsemblPlantsGene:PGSC0003DMG400000280	PGSC:PGSC0003DMG400000280	EnsemblPlants:PGSC0003DMT400000761	ScanProsite:PS00344
PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF226	SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI000294A966
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

GATA transcription factor 21 [Source:PGSC_GENE;Acc:PGSC0003DMG400000280]

Coordinates

chr12:+:3718188..3720670

Molecular Weight (calculated)

31846.3 Da

IEP (calculated)

10.103

GRAVY (calculated)

-0.781

Length

287 amino acids

Sequence
(BLAST)

001: MSLVSPYNNN YQFSSSSTNS SCQTFFNIST TTNIQDQSGY DYHSHQFHQP QHQHEVDNFA SRSSGSHDHL EKKNKGLKLT LCKKGEQKMK NLKLEDQKQQ
101: IIETDYSSNS SSNNNIIPIR VCSDCNTTKT PLWRSGPKGP KSLCNACGIR QRKARRAAAA AAAATNNGTN FTSTETTTTM KIKVQQQKHK ITKVNTNHVV
201: PFKKRCKFLS NTTTTPAPVP APAPRVGSSS SSSSYNNNND VQQKKNLCFE DFFVNLSNNL AIHRVFPQDE KEAAILLMAL SSGLVHG

Best Arabidopsis Sequence Match ( AT4G26150.1 )
(BLAST)

001: MGSNFHYTID LNEDQNHQPF FASLGSSLHH HLQQQQQQQQ HFHHQASSNP SSLMSPSLSY FPFLINSRQD QVYVGYNNNT FHDVLDTHIS QPLETKNFVS
101: DGGSSSSDQM VPKKETRLKL TIKKKDNHQD QTDLPQSPIK DMTGTNSLKW ISSKVRLMKK KKAIITTSDS SKQHTNNDQS SNLSNSERQN GYNNDCVIRI
201: CSDCNTTKTP LWRSGPRGPK SLCNACGIRQ RKARRAAMAT ATATAVSGVS PPVMKKKMQN KNKISNGVYK ILSPLPLKVN TCKRMITLEE TALAEDLETQ
301: SNSTMLSSSD NIYFDDLALL LSKSSAYQQV FPQDEKEAAI LLMALSHGMV HG

Arabidopsis Description

GATA22Putative GATA transcription factor 22 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.