CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016361_P001	Maize	nucleus	73.13	76.49
Os02t0220400-01	Rice	nucleus	54.78	60.06
TraesCS6D01G173000.1	Wheat	cytosol	51.94	58.77
TraesCS6A01G185900.1	Wheat	cytosol	51.94	58.77
TraesCS6B01G214900.1	Wheat	cytosol	50.9	57.6
HORVU6Hr1G039720.2	Barley	cytosol	50.13	56.4
GSMUA_Achr7P09030_001	Banana	nucleus	21.19	52.56
EER88552	Sorghum	nucleus	45.74	45.85
GSMUA_Achr2P16730_001	Banana	nucleus	23.51	43.75
VIT_11s0016g02210.t01	Wine grape	nucleus, plastid	26.61	33.33
KRH02716	Soybean	nucleus	26.87	32.3
VIT_04s0008g01290.t01	Wine grape	plastid	25.32	32.03
KRH19153	Soybean	nucleus	25.84	31.85
KXG32453	Sorghum	nucleus	9.82	30.4
Bra035633.1-P	Field mustard	nucleus	23.0	29.57
Solyc07g038160.2.1	Tomato	nucleus	20.16	29.32
EER93149	Sorghum	nucleus	11.63	28.66
PGSC0003DMT400000761	Potato	nucleus	20.41	27.53
PGSC0003DMT400011449	Potato	nucleus	20.16	27.27
CDX94365	Canola	nucleus	25.32	27.22
AT4G26150.1	Thale cress	cytosol	24.55	26.99
KRH12382	Soybean	nucleus	21.96	26.98
Solyc12g008830.1.1	Tomato	nucleus	20.41	26.96
Bra026461.1-P	Field mustard	nucleus	25.06	26.94
CDX89358	Canola	nucleus	24.81	26.67
KXG21349	Sorghum	cytosol	10.59	26.28
KRH61505	Soybean	nucleus	19.64	26.03
CDY67979	Canola	nucleus	25.84	25.51
KRH15535	Soybean	nucleus	20.16	25.49
CDY42752	Canola	nucleus	24.29	25.41
CDY42753	Canola	nucleus	24.29	25.41
CDY20709	Canola	nucleus	25.84	25.38
Bra002788.1-P	Field mustard	nucleus	24.81	24.81
CDY32755	Canola	nucleus	24.81	24.81
CDX88593	Canola	nucleus	22.74	24.79
KRH37384	Soybean	nucleus	21.45	24.63
CDY32891	Canola	nucleus	24.55	24.48
CDY67546	Canola	nucleus	23.77	24.47
EES04307	Sorghum	nucleus	13.7	24.42
Bra019118.1-P	Field mustard	nucleus	24.29	24.23
Bra006851.1-P	Field mustard	nucleus, plastid	24.03	24.22
KRH05458	Soybean	nucleus	19.12	24.18
AT5G56860.1	Thale cress	nucleus	24.81	24.12
CDY65439	Canola	nucleus	23.77	23.96
KXG33047	Sorghum	extracellular	12.92	20.49
EES19963	Sorghum	mitochondrion, nucleus, vacuole	11.63	19.65
Bra001644.1-P	Field mustard	nucleus	6.98	18.49
EES20002	Sorghum	plastid	10.85	14.19

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	UniProt:A0A194YNP7	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009416	GO:GO:0009628
GO:GO:0009646	GO:GO:0009658	GO:GO:0009719	GO:GO:0009735	GO:GO:0009739	GO:GO:0009791
GO:GO:0009908	GO:GO:0009909	GO:GO:0009987	GO:GO:0016043	GO:GO:0043565	GO:GO:0046872
GO:GO:0099402	GO:GO:1901698	InterPro:IPR000679	InterPro:IPR013088	EnsemblPlants:KXG29816	ProteinID:KXG29816
ProteinID:KXG29816.1	PFAM:PF00320	ScanProsite:PS00344	PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF204
SMART:SM00401	EnsemblPlantsGene:SORBI_3004G094100	SUPFAM:SSF57716	UniParc:UPI0007F1FDED	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:8096798..8100191

Molecular Weight (calculated)

41664.4 Da

IEP (calculated)

8.677

GRAVY (calculated)

-0.613

Length

387 amino acids

Sequence
(BLAST)

001: MSTIYMSQLS TLPLMEMEGE QDQDQGLFRP APFHVAKDPP ILFPFMITNP VDQLQGQSSS YGDQHLRQHV LSESTHQQFT DRMMMSGSEV FPTMPSPFRQ
101: TIQSIDGDMI QRSAYDPYDT ENNKHTEGLR SGGGGGGWTV SSSPPAKMKI MRRKATSEYP EGGGGGARKP RRRPQAHHQD AESQLLQQQQ QAMGGVVRVC
201: SDCNTTKTPL WRSGPCGPKS LCNACGIRQR KARRAMAAAA AAAAASSNGG APQAATEQQP KPAKKEKRSD IVDRSSLPFK KRCKQTMVVV DHAAGVAATE
301: ATPPPPPPET AALTKDQADV DHVSSDKKQV NGHGATSLES SKIVATPPPQ AMSSFHAFPA DEITDAAMLL MTLSCGHARL QLAMASS

Best Arabidopsis Sequence Match ( AT5G56860.1 )
(BLAST)

001: MDSNFHYSID LNEDQNHHEQ PFFYPLGSSS SLHHHHHHHH HQVPSNSSSS SSSISSLSSY LPFLINSQED QHVAYNNTYH ADHLHLSQPL KAKMFVANGG
101: SSACDHMVPK KETRLKLTIR KKDHEDQPHP LHQNPTKPDS DSDKWLMSPK MRLIKKTITN NKQLIDQTNN NNHKESDHYP LNHKTNFDED HHEDLNFKNV
201: LTRKTTAATT ENRYNTINEN GYSNNNGVIR VCSDCNTTKT PLWRSGPRGP KSLCNACGIR QRKARRAAMA AAAAAGDQEV AVAPRVQQLP LKKKLQNKKK
301: RSNGGEKYNH SPPMVAKAKK CKIKEEEEKE MEAETVAGDS EISKSTTSSN SSISSNKFCF DDLTIMLSKS SAYQQVFPQD EKEAAVLLMA LSYGMVHG

Arabidopsis Description

GATA21GATA transcription factor 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5HZ36]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.