Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G56860.1 | KRG93437 | AT3G01320.1 | 19962994 |
| AT5G56860.1 | KRH18559 | AT3G01320.1 | 19962994 |
| AT5G56860.1 | KRH18561 | AT3G01320.1 | 19962994 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH12382 | Soybean | nucleus | 79.82 | 85.4 |
| KRH02716 | Soybean | nucleus | 55.19 | 57.76 |
| KRH19153 | Soybean | nucleus | 52.82 | 56.69 |
| KRH68462 | Soybean | cytosol | 12.17 | 51.25 |
| KRG96744 | Soybean | cytosol, mitochondrion, nucleus | 10.98 | 44.58 |
| KRH02314 | Soybean | nucleus | 14.84 | 35.71 |
| GSMUA_Achr8P24880_001 | Banana | nucleus | 21.66 | 33.49 |
| KRH50773 | Soybean | nucleus | 15.13 | 32.28 |
| Bra035633.1-P | Field mustard | nucleus | 26.11 | 29.24 |
| KRH61505 | Soybean | nucleus | 25.22 | 29.11 |
| CDX88593 | Canola | nucleus | 30.27 | 28.73 |
| AT4G26150.1 | Thale cress | cytosol | 29.67 | 28.41 |
| AT5G56860.1 | Thale cress | nucleus | 32.94 | 27.89 |
| CDY42753 | Canola | nucleus | 30.56 | 27.84 |
| CDY42752 | Canola | nucleus | 30.56 | 27.84 |
| CDY67979 | Canola | nucleus | 32.34 | 27.81 |
| CDY20709 | Canola | nucleus | 32.34 | 27.66 |
| CDY67546 | Canola | nucleus | 30.86 | 27.66 |
| CDX94365 | Canola | nucleus | 29.38 | 27.5 |
| KRH15535 | Soybean | nucleus | 24.93 | 27.45 |
| Bra002788.1-P | Field mustard | nucleus | 31.45 | 27.39 |
| CDY32755 | Canola | nucleus | 31.45 | 27.39 |
| CDY65439 | Canola | nucleus | 31.16 | 27.34 |
| Bra006851.1-P | Field mustard | nucleus, plastid | 30.86 | 27.08 |
| CDY32891 | Canola | nucleus | 30.56 | 26.55 |
| Bra019118.1-P | Field mustard | nucleus | 30.56 | 26.55 |
| KRH05458 | Soybean | nucleus | 23.74 | 26.14 |
| Bra026461.1-P | Field mustard | nucleus | 27.89 | 26.11 |
| CDX89358 | Canola | nucleus | 27.6 | 25.83 |
| Os02t0220400-01 | Rice | nucleus | 24.93 | 23.8 |
| TraesCS6D01G173000.1 | Wheat | cytosol | 23.74 | 23.39 |
| TraesCS6A01G185900.1 | Wheat | cytosol | 23.74 | 23.39 |
| KRH30068 | Soybean | plastid | 10.68 | 23.08 |
| HORVU6Hr1G039720.2 | Barley | cytosol | 23.44 | 22.97 |
| TraesCS7D01G359900.1 | Wheat | nucleus | 24.33 | 22.84 |
| TraesCS7B01G264800.1 | Wheat | nucleus | 24.33 | 22.71 |
| HORVU7Hr1G086810.1 | Barley | nucleus | 24.04 | 22.5 |
| TraesCS7A01G363100.1 | Wheat | nucleus | 23.74 | 22.47 |
| TraesCS6B01G214900.1 | Wheat | cytosol | 22.55 | 22.22 |
| Zm00001d016361_P001 | Maize | nucleus | 24.33 | 22.16 |
| Zm00001d046354_P001 | Maize | nucleus | 24.04 | 21.89 |
| KRH28681 | Soybean | nucleus | 15.73 | 21.63 |
| Os06t0571800-02 | Rice | nucleus | 22.26 | 21.61 |
| KRH08269 | Soybean | nucleus | 16.02 | 21.51 |
| KXG29816 | Sorghum | nucleus | 24.63 | 21.45 |
| KRH69915 | Soybean | nucleus | 16.02 | 21.43 |
| EER88552 | Sorghum | nucleus | 24.33 | 21.24 |
| KRH43324 | Soybean | nucleus | 7.72 | 19.12 |
Protein Annotations
| EntrezGene:100792098 | MapMan:15.5.1.3 | Gene3D:3.30.50.10 | EMBL:ACUP02005443 | EnsemblPlantsGene:GLYMA_09G062800 | GO:GO:0000977 |
| GO:GO:0001085 | GO:GO:0001228 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003682 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005667 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006366 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 |
| GO:GO:0045944 | GO:GO:0046872 | UniProt:I1L1G9 | InterPro:IPR000679 | InterPro:IPR013088 | EnsemblPlants:KRH37384 |
| ProteinID:KRH37384 | ProteinID:KRH37384.1 | PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 | PANTHER:PTHR10071 |
| PANTHER:PTHR10071:SF191 | SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI000233CD90 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr9:-:5979850..5982490
Molecular Weight (calculated)
38171.8 Da
IEP (calculated)
10.382
GRAVY (calculated)
-0.766
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MIPTYRYSVS SPMPIDLNED HTHHVFSTSH QASSSSSSLS FSILFNPDHQ GQGGSCCHWE SKHLQSDEEA QKIVPSSESW EHPVSEKDEN RSDLKLRVWK
101: KEDKCENFQV EDNSTKWMPL KMRMMRRMMV SDQTGFDTEG MISNSKQIKN EEKNPPLTPL GTDDSNNYNS SANHSKITVR VCSDCHTTKT PLWRSGPKGP
201: KTLCNACGIR QRKARRAIAV AATANGMNPV EAEKSQVKKG NKLHSKGMKS KTKGAPHMKK KRKLGAKYRK RFGAFEDLTV RLSKNLALQK VFPPDEKEAA
301: ILLMALSLWP SSWLSHRSLR QLLRFMRYIG GKTIIIV
101: KEDKCENFQV EDNSTKWMPL KMRMMRRMMV SDQTGFDTEG MISNSKQIKN EEKNPPLTPL GTDDSNNYNS SANHSKITVR VCSDCHTTKT PLWRSGPKGP
201: KTLCNACGIR QRKARRAIAV AATANGMNPV EAEKSQVKKG NKLHSKGMKS KTKGAPHMKK KRKLGAKYRK RFGAFEDLTV RLSKNLALQK VFPPDEKEAA
301: ILLMALSLWP SSWLSHRSLR QLLRFMRYIG GKTIIIV
001: MDSNFHYSID LNEDQNHHEQ PFFYPLGSSS SLHHHHHHHH HQVPSNSSSS SSSISSLSSY LPFLINSQED QHVAYNNTYH ADHLHLSQPL KAKMFVANGG
101: SSACDHMVPK KETRLKLTIR KKDHEDQPHP LHQNPTKPDS DSDKWLMSPK MRLIKKTITN NKQLIDQTNN NNHKESDHYP LNHKTNFDED HHEDLNFKNV
201: LTRKTTAATT ENRYNTINEN GYSNNNGVIR VCSDCNTTKT PLWRSGPRGP KSLCNACGIR QRKARRAAMA AAAAAGDQEV AVAPRVQQLP LKKKLQNKKK
301: RSNGGEKYNH SPPMVAKAKK CKIKEEEEKE MEAETVAGDS EISKSTTSSN SSISSNKFCF DDLTIMLSKS SAYQQVFPQD EKEAAVLLMA LSYGMVHG
101: SSACDHMVPK KETRLKLTIR KKDHEDQPHP LHQNPTKPDS DSDKWLMSPK MRLIKKTITN NKQLIDQTNN NNHKESDHYP LNHKTNFDED HHEDLNFKNV
201: LTRKTTAATT ENRYNTINEN GYSNNNGVIR VCSDCNTTKT PLWRSGPRGP KSLCNACGIR QRKARRAAMA AAAAAGDQEV AVAPRVQQLP LKKKLQNKKK
301: RSNGGEKYNH SPPMVAKAKK CKIKEEEEKE MEAETVAGDS EISKSTTSSN SSISSNKFCF DDLTIMLSKS SAYQQVFPQD EKEAAVLLMA LSYGMVHG
Arabidopsis Description
GATA21GATA transcription factor 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5HZ36]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.