Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH08269 | Soybean | nucleus | 86.9 | 87.25 |
| KRH28681 | Soybean | nucleus | 67.46 | 69.39 |
| KRH30068 | Soybean | plastid | 41.27 | 66.67 |
| VIT_04s0023g01840.t01 | Wine grape | cytosol, plastid | 53.17 | 55.83 |
| PGSC0003DMT400009031 | Potato | plastid | 50.4 | 51.42 |
| Solyc02g085190.1.1 | Tomato | plastid | 49.6 | 49.6 |
| KRH68462 | Soybean | cytosol | 11.9 | 37.5 |
| KRH43324 | Soybean | nucleus | 19.84 | 36.76 |
| TraesCS3B01G269000.1 | Wheat | cytosol, extracellular, nucleus | 32.14 | 36.16 |
| GSMUA_Achr6P27250_001 | Banana | cytosol, extracellular, nucleus | 32.94 | 35.78 |
| TraesCS3D01G241100.1 | Wheat | cytosol, extracellular, nucleus | 32.54 | 35.65 |
| HORVU3Hr1G059870.2 | Barley | cytosol, extracellular, nucleus | 32.54 | 35.34 |
| Zm00001d043969_P001 | Maize | endoplasmic reticulum | 32.54 | 35.19 |
| TraesCS3A01G240800.1 | Wheat | cytosol, extracellular, nucleus | 32.54 | 35.04 |
| KXG33047 | Sorghum | extracellular | 33.73 | 34.84 |
| Os01t0662800-00 | Rice | cytosol, extracellular, nucleus | 32.94 | 34.3 |
| GSMUA_Achr7P25620_001 | Banana | nucleus | 31.35 | 33.91 |
| KRG96744 | Soybean | cytosol, mitochondrion, nucleus | 11.11 | 33.73 |
| GSMUA_Achr3P31070_001 | Banana | cytosol, nucleus, plastid | 28.17 | 33.65 |
| Zm00001d009604_P001 | Maize | cytosol, nucleus, plastid | 26.59 | 33.0 |
| Os05t0567900-00 | Rice | cytosol, extracellular, plastid | 32.14 | 32.4 |
| EES19963 | Sorghum | mitochondrion, nucleus, vacuole | 28.57 | 31.44 |
| KRH02314 | Soybean | nucleus | 13.49 | 24.29 |
| KRH50773 | Soybean | nucleus | 13.49 | 21.52 |
| KRH19153 | Soybean | nucleus | 25.79 | 20.7 |
| KRH02716 | Soybean | nucleus | 24.21 | 18.94 |
| KRH12382 | Soybean | nucleus | 21.03 | 16.83 |
| KRH61505 | Soybean | nucleus | 19.05 | 16.44 |
| KRH37384 | Soybean | nucleus | 21.43 | 16.02 |
| KRH15535 | Soybean | nucleus | 18.25 | 15.03 |
| KRH05458 | Soybean | nucleus | 17.46 | 14.38 |
Protein Annotations
| EntrezGene:100799154 | MapMan:15.5.1.3 | Gene3D:3.30.50.10 | EMBL:ACUP02000735 | EnsemblPlantsGene:GLYMA_02G056600 | GO:GO:0000977 |
| GO:GO:0001085 | GO:GO:0001228 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003682 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005667 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006366 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 |
| GO:GO:0045944 | GO:GO:0046872 | UniProt:I1JCP8 | InterPro:IPR000679 | InterPro:IPR013088 | EnsemblPlants:KRH69915 |
| ProteinID:KRH69915 | ProteinID:KRH69915.1 | PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 | PANTHER:PTHR10071 |
| PANTHER:PTHR10071:SF305 | SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI00023BDBB0 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr2:+:5092296..5094207
Molecular Weight (calculated)
28159.2 Da
IEP (calculated)
7.776
GRAVY (calculated)
-0.968
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MMHHCCGSSQ GHVMGTCTCG MYHNHNSSEA SSYGSMLFSM PNNNEYYQEH DIYSSFTPSH SSVDCTLSLG TPSTRLTQDE DDNKRHRHQR RSGVTSFCWD
101: LLHSNHNNNN ITQSQSKSSS RGSNNNNDSL LARRCANCDT TSTPLWRNGP RGPKSLCNAC GIRFKKEQRR ASAAGATSAS AAVPGGAMES ARVYGHHHNN
201: SWYAHSQSQK MMGNELRFMD DSDDRDSDNN GIPFLSWKLN IPDRTSLVDE RW
101: LLHSNHNNNN ITQSQSKSSS RGSNNNNDSL LARRCANCDT TSTPLWRNGP RGPKSLCNAC GIRFKKEQRR ASAAGATSAS AAVPGGAMES ARVYGHHHNN
201: SWYAHSQSQK MMGNELRFMD DSDDRDSDNN GIPFLSWKLN IPDRTSLVDE RW
001: MMQTPYTTST QGQYCHSCGM FHHHSQSCCY NNNNNSNAGS YSMVFSMQNG GVFEQNGEDY HHSSSLVDCT LSLGTPSTRL CEEDEKRRRS TSSGASSCIS
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR
Arabidopsis Description
GATA18Uncharacterized protein At3g50870 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVE1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.