Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G240800.1 | nucleus, nucleus |
| TraesCS3B01G269000.1 | nucleus, nucleus |
| TraesCS3D01G241100.1 | nucleus, nucleus |
| TraesCS6A01G185900.1 | nucleus, nucleus |
| TraesCS6B01G214900.1 | nucleus, nucleus |
| TraesCS6D01G173000.1 | nucleus, nucleus |
| TraesCS7A01G363100.1 | nucleus, nucleus |
| TraesCS7B01G264800.1 | nucleus, nucleus |
| TraesCS7D01G359900.1 | nucleus, nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G241100.1 | Wheat | cytosol, extracellular, nucleus | 96.58 | 98.26 |
| TraesCS3B01G269000.1 | Wheat | cytosol, extracellular, nucleus | 94.02 | 98.21 |
| HORVU3Hr1G059870.2 | Barley | cytosol, extracellular, nucleus | 95.73 | 96.55 |
| Zm00001d043969_P001 | Maize | endoplasmic reticulum | 78.63 | 78.97 |
| Os01t0662800-00 | Rice | cytosol, extracellular, nucleus | 79.49 | 76.86 |
| KXG33047 | Sorghum | extracellular | 79.06 | 75.82 |
| GSMUA_Achr7P25620_001 | Banana | nucleus | 47.86 | 48.07 |
| GSMUA_Achr6P27250_001 | Banana | cytosol, extracellular, nucleus | 47.44 | 47.84 |
| GSMUA_Achr3P31070_001 | Banana | cytosol, nucleus, plastid | 38.46 | 42.65 |
| KRH30068 | Soybean | plastid | 26.07 | 39.1 |
| TraesCS1A01G418200.1 | Wheat | plastid | 34.19 | 36.53 |
| Bra039614.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 20.51 | 35.04 |
| VIT_04s0023g01840.t01 | Wine grape | cytosol, plastid | 35.47 | 34.58 |
| KRH28681 | Soybean | nucleus | 35.9 | 34.29 |
| CDY13040 | Canola | cytosol | 29.06 | 34.17 |
| CDY72649 | Canola | nucleus | 29.06 | 34.0 |
| CDY60289 | Canola | nucleus | 29.06 | 33.66 |
| PGSC0003DMT400009031 | Potato | plastid | 35.04 | 33.2 |
| AT4G36620.1 | Thale cress | cytosol | 29.91 | 33.18 |
| KRH08269 | Soybean | nucleus | 35.47 | 33.07 |
| Bra010563.1-P | Field mustard | cytosol | 29.91 | 32.86 |
| KRH69915 | Soybean | nucleus | 35.04 | 32.54 |
| CDY24779 | Canola | nucleus | 29.49 | 32.39 |
| CDY53079 | Canola | cytosol | 28.63 | 32.37 |
| CDY51221 | Canola | nucleus | 27.78 | 32.34 |
| CDY69687 | Canola | nucleus | 26.07 | 32.28 |
| Bra017766.1-P | Field mustard | nucleus | 26.07 | 32.28 |
| Solyc02g085190.1.1 | Tomato | plastid | 34.62 | 32.14 |
| CDY70754 | Canola | nucleus | 29.91 | 31.39 |
| Bra011695.1-P | Field mustard | nucleus | 29.91 | 31.39 |
| CDY68627 | Canola | nucleus | 29.49 | 31.08 |
| CDX69237 | Canola | nucleus | 29.06 | 30.49 |
| CDX72587 | Canola | cytosol | 29.49 | 30.4 |
| AT2G18380.1 | Thale cress | cytosol | 26.92 | 30.29 |
| CDX77958 | Canola | nucleus | 33.33 | 29.32 |
| Solyc02g062760.2.1 | Tomato | nucleus | 31.2 | 28.74 |
| PGSC0003DMT400040074 | Potato | nucleus | 30.34 | 28.63 |
| CDY28986 | Canola | cytosol | 32.48 | 27.74 |
| Bra036854.1-P | Field mustard | nucleus | 34.19 | 27.68 |
| CDX73777 | Canola | nucleus | 34.19 | 27.59 |
| AT3G50870.1 | Thale cress | cytosol | 33.76 | 26.78 |
| CDY30768 | Canola | nucleus | 26.07 | 26.75 |
| Bra012080.1-P | Field mustard | nucleus | 26.92 | 26.69 |
| CDY45238 | Canola | nucleus | 26.92 | 26.69 |
| Bra037221.1-P | Field mustard | nucleus | 26.92 | 26.58 |
| CDX90680 | Canola | nucleus | 31.2 | 26.26 |
| Bra012883.1-P | Field mustard | nucleus | 31.2 | 26.26 |
| KRH43324 | Soybean | nucleus | 14.53 | 25.0 |
| TraesCS1A01G097300.1 | Wheat | cytosol | 14.1 | 20.75 |
| TraesCS3A01G538400.1 | Wheat | nucleus | 14.53 | 20.24 |
| TraesCS4A01G364700.1 | Wheat | nucleus | 14.1 | 18.23 |
| TraesCS6A01G185900.1 | Wheat | cytosol | 21.37 | 14.62 |
| TraesCS7A01G363100.1 | Wheat | nucleus | 17.95 | 11.8 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR000679 | InterPro:IPR013088 | PFAM:PF00320 | ScanProsite:PS00344 |
| PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF305 | SMART:SM00401 | SUPFAM:SSF57716 | EnsemblPlantsGene:TraesCS3A01G240800 |
| EnsemblPlants:TraesCS3A01G240800.1 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | TIGR:cd00202 | SEG:seg | : |
Description
No Description!
Coordinates
chr3A:+:452932896..452933721
Molecular Weight (calculated)
24495.5 Da
IEP (calculated)
7.584
GRAVY (calculated)
-0.354
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHEAAPCTC GLLYGSCGGG CSMLFAAAPG DHHYYIKQCG DDGSYASYGG SVDCTLSLGT PSTRRAEAGV RAPAAGLPWE AVPSCNGRQD IGPARADQSN
101: AGAASARRCA NCDTTSTPLW RNGPRGPKSL CNACGIRYKK EERRAAAAAV APTALASDSG IEYAYGYARH HHHQQQQQQQ WGCYGPAVAK AASYGLFGDA
201: AAEDGPCLPW GLGVMPSSPA FGSVREMTSL FQYY
101: AGAASARRCA NCDTTSTPLW RNGPRGPKSL CNACGIRYKK EERRAAAAAV APTALASDSG IEYAYGYARH HHHQQQQQQQ WGCYGPAVAK AASYGLFGDA
201: AAEDGPCLPW GLGVMPSSPA FGSVREMTSL FQYY
001: MMQTPYTTST QGQYCHSCGM FHHHSQSCCY NNNNNSNAGS YSMVFSMQNG GVFEQNGEDY HHSSSLVDCT LSLGTPSTRL CEEDEKRRRS TSSGASSCIS
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR
Arabidopsis Description
GATA18Uncharacterized protein At3g50870 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVE1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.