Factsheet for Bra011695.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70754	Canola	nucleus	98.21	98.21
CDX69237	Canola	nucleus	97.31	97.31
CDY68627	Canola	nucleus	95.07	95.5
Bra017766.1-P	Field mustard	nucleus	71.75	84.66
Bra010563.1-P	Field mustard	cytosol	77.13	80.75
Bra039614.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	34.08	55.47
Bra012883.1-P	Field mustard	nucleus	51.57	41.37
PGSC0003DMT400009031	Potato	plastid	45.29	40.89
Bra036854.1-P	Field mustard	nucleus	52.47	40.48
Solyc02g085190.1.1	Tomato	plastid	45.29	40.08
VIT_04s0023g01840.t01	Wine grape	cytosol, plastid	41.26	38.33
Bra012080.1-P	Field mustard	nucleus	36.32	34.32
Bra009926.1-P	Field mustard	cytosol	12.11	34.18
Bra037221.1-P	Field mustard	nucleus	35.43	33.33
GSMUA_Achr6P27250_001	Banana	cytosol, extracellular, nucleus	34.53	33.19
PGSC0003DMT400040074	Potato	nucleus	36.32	32.66
Solyc02g062760.2.1	Tomato	nucleus	35.87	31.5
Zm00001d009604_P001	Maize	cytosol, nucleus, plastid	28.25	31.03
Zm00001d043969_P001	Maize	endoplasmic reticulum	32.29	30.9
TraesCS3B01G269000.1	Wheat	cytosol, extracellular, nucleus	30.94	30.8
GSMUA_Achr7P25620_001	Banana	nucleus	31.84	30.47
TraesCS3D01G241100.1	Wheat	cytosol, extracellular, nucleus	31.39	30.43
HORVU3Hr1G059870.2	Barley	cytosol, extracellular, nucleus	31.39	30.17
TraesCS3A01G240800.1	Wheat	cytosol, extracellular, nucleus	31.39	29.91
Os05t0567900-00	Rice	cytosol, extracellular, plastid	32.74	29.2
GSMUA_Achr3P31070_001	Banana	cytosol, nucleus, plastid	27.35	28.91
KXG33047	Sorghum	extracellular	31.39	28.69
EES19963	Sorghum	mitochondrion, nucleus, vacuole	29.15	28.38
Os01t0662800-00	Rice	cytosol, extracellular, nucleus	30.49	28.1
KRH43324	Soybean	nucleus	17.04	27.94
Bra036600.1-P	Field mustard	nucleus	12.56	27.18
Bra037421.1-P	Field mustard	nucleus	13.9	24.41
Bra020650.1-P	Field mustard	nucleus	13.9	22.14
Bra040288.1-P	Field mustard	nucleus	13.0	20.86
Bra022184.1-P	Field mustard	nucleus	15.25	20.48
Bra021209.1-P	Field mustard	nucleus	13.45	17.54
Bra012742.1-P	Field mustard	nucleus	12.56	16.77
Bra033533.1-P	Field mustard	nucleus	13.45	16.76
Bra035633.1-P	Field mustard	nucleus	21.08	15.61
Bra006851.1-P	Field mustard	nucleus, plastid	21.97	12.76
Bra019118.1-P	Field mustard	nucleus	21.97	12.63
Bra026461.1-P	Field mustard	nucleus	18.83	11.67
Bra002788.1-P	Field mustard	nucleus	20.18	11.63
Bra001644.1-P	Field mustard	nucleus	6.73	10.27

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EnsemblPlantsGene:Bra011695	EnsemblPlants:Bra011695.1	EnsemblPlants:Bra011695.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088	UniProt:M4D5D8	PFAM:PF00320	ScanProsite:PS00344
PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF305	SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI00025469BA
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

AT4G36620 (E=3e-072) | zinc finger (GATA type) family protein

Coordinates

chrA01:+:1017231..1018210

Molecular Weight (calculated)

24517.7 Da

IEP (calculated)

6.941

GRAVY (calculated)

-0.840

Length

223 amino acids

Sequence
(BLAST)

001: MGLSMFFSSE NDVIHHHSSP YASVDCTLSL GTPSTRLCND DDDRRFSTHT SNNISNALGS WDFSHGGKKA GEGGGNNLVA RRCANCDTTS TPLWRNGPSG
101: PKSLCNACGI RFKKEERRAS AAGNSTSGGG LTAFGVPASD HHGGADYYYN NNSNNNHYYA SSSPWTHHQQ QNTQRVPYYS PANNNEYSFV DDVRESHDIT
201: TDPFLSWRLN VADRTRLVHD CTM

Best Arabidopsis Sequence Match ( AT4G36620.1 )
(BLAST)

001: MGFSMFFSPE NDVSHHSSPY ASVDCTLSLG TPSTRLCNED DERRFSSHTS DTIGWDFLNG SKKGGGGGGH NLLARRCANC DTTSTPLWRN GPRGPKSLCN
101: ACGIRFKKEE RRASTARNST SGGGSTAAGV PTLDHQASAN YYYNNNNQYA SSSPWHHQHN TQRVPYYSPA NNEYSYVDDV RVVDHDVTTD PFLSWRLNVA
201: DRTGLVHDFT M

Arabidopsis Description

GATA19Uncharacterized protein At4g36620 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVL8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.