Factsheet for Bra017766.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69687	Canola	nucleus	99.47	99.47
CDX72587	Canola	cytosol	97.35	81.06
Bra011695.1-P	Field mustard	nucleus	84.66	71.75
Bra010563.1-P	Field mustard	cytosol	78.84	69.95
Bra039614.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	37.04	51.09
VIT_04s0023g01840.t01	Wine grape	cytosol, plastid	44.97	35.42
PGSC0003DMT400009031	Potato	plastid	46.03	35.22
Bra012883.1-P	Field mustard	nucleus	50.79	34.53
Bra036854.1-P	Field mustard	nucleus	52.38	34.26
Bra009926.1-P	Field mustard	cytosol	14.29	34.18
Solyc02g085190.1.1	Tomato	plastid	44.97	33.73
Bra037221.1-P	Field mustard	nucleus	41.27	32.91
PGSC0003DMT400040074	Potato	nucleus	41.8	31.85
Solyc02g062760.2.1	Tomato	nucleus	41.27	30.71
KRH43324	Soybean	nucleus	21.16	29.41
Bra012080.1-P	Field mustard	nucleus	35.98	28.81
Zm00001d009604_P001	Maize	cytosol, nucleus, plastid	29.63	27.59
TraesCS3B01G269000.1	Wheat	cytosol, extracellular, nucleus	31.75	26.79
GSMUA_Achr6P27250_001	Banana	cytosol, extracellular, nucleus	32.8	26.72
Zm00001d043969_P001	Maize	endoplasmic reticulum	32.8	26.61
GSMUA_Achr3P31070_001	Banana	cytosol, nucleus, plastid	29.63	26.54
TraesCS3D01G241100.1	Wheat	cytosol, extracellular, nucleus	32.28	26.52
HORVU3Hr1G059870.2	Barley	cytosol, extracellular, nucleus	32.28	26.29
TraesCS3A01G240800.1	Wheat	cytosol, extracellular, nucleus	32.28	26.07
GSMUA_Achr7P25620_001	Banana	nucleus	31.75	25.75
Bra036600.1-P	Field mustard	nucleus	13.76	25.24
Os01t0662800-00	Rice	cytosol, extracellular, nucleus	32.28	25.21
KXG33047	Sorghum	extracellular	32.28	25.0
Os05t0567900-00	Rice	cytosol, extracellular, plastid	32.8	24.8
EES19963	Sorghum	mitochondrion, nucleus, vacuole	29.1	24.02
Bra037421.1-P	Field mustard	nucleus	14.29	21.26
Bra020650.1-P	Field mustard	nucleus	14.81	20.0
Bra040288.1-P	Field mustard	nucleus	14.29	19.42
Bra022184.1-P	Field mustard	nucleus	15.34	17.47
Bra021209.1-P	Field mustard	nucleus	13.76	15.2
Bra033533.1-P	Field mustard	nucleus	14.29	15.08
Bra012742.1-P	Field mustard	nucleus	13.23	14.97
Bra035633.1-P	Field mustard	nucleus	21.16	13.29
Bra006851.1-P	Field mustard	nucleus, plastid	23.28	11.46
Bra019118.1-P	Field mustard	nucleus	21.69	10.57
Bra002788.1-P	Field mustard	nucleus	20.63	10.08
Bra026461.1-P	Field mustard	nucleus	18.52	9.72
Bra001644.1-P	Field mustard	nucleus	4.76	6.16

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EnsemblPlantsGene:Bra017766	EnsemblPlants:Bra017766.1	EnsemblPlants:Bra017766.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088	UniProt:M4DMN1	PFAM:PF00320	ScanProsite:PS00344
PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF305	SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI0002540C4F
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

AT4G36620 (E=9e-070) | zinc finger (GATA type) family protein

Coordinates

chrA03:-:30322137..30322819

Molecular Weight (calculated)

20805.6 Da

IEP (calculated)

8.591

GRAVY (calculated)

-0.894

Length

189 amino acids

Sequence
(BLAST)

001: MMGFSMFFSE NDVVHHSSAY ASVDCTLSLG TPSTRLCNDD DDRRFSSHTS NNMSNALGSW DFLHGGKKGG GGGGNNLLAR RCANCDTTST PLWRNGPRGP
101: KSLCNACGIR FKKEERRAST ARNSTSGGVS TAAAGVPASD HHGVTNYYYN NNNNNNNHYD SSSPWIHHQH QNTQRVPYYS PANNEYFFR

Best Arabidopsis Sequence Match ( AT4G36620.1 )
(BLAST)

001: MGFSMFFSPE NDVSHHSSPY ASVDCTLSLG TPSTRLCNED DERRFSSHTS DTIGWDFLNG SKKGGGGGGH NLLARRCANC DTTSTPLWRN GPRGPKSLCN
101: ACGIRFKKEE RRASTARNST SGGGSTAAGV PTLDHQASAN YYYNNNNQYA SSSPWHHQHN TQRVPYYSPA NNEYSYVDDV RVVDHDVTTD PFLSWRLNVA
201: DRTGLVHDFT M

Arabidopsis Description

GATA19Uncharacterized protein At4g36620 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVL8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.