Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017766.1-P | Field mustard | nucleus | 81.06 | 97.35 |
| CDY69687 | Canola | nucleus | 80.62 | 96.83 |
| CDY70754 | Canola | nucleus | 81.06 | 82.51 |
| CDY24779 | Canola | nucleus | 76.65 | 81.69 |
| CDX69237 | Canola | nucleus | 80.18 | 81.61 |
| CDY68627 | Canola | nucleus | 79.74 | 81.53 |
| CDY53079 | Canola | cytosol | 73.57 | 80.68 |
| CDY72649 | Canola | nucleus | 42.73 | 48.5 |
| CDY13040 | Canola | cytosol | 42.29 | 48.24 |
| CDY60289 | Canola | nucleus | 42.29 | 47.52 |
| CDY51221 | Canola | nucleus | 41.41 | 46.77 |
| CDX77958 | Canola | nucleus | 51.54 | 43.98 |
| CDY28986 | Canola | cytosol | 52.86 | 43.8 |
| CDX90680 | Canola | nucleus | 52.86 | 43.17 |
| PGSC0003DMT400009031 | Potato | plastid | 45.81 | 42.11 |
| CDX73777 | Canola | nucleus | 53.74 | 42.07 |
| Solyc02g085190.1.1 | Tomato | plastid | 44.93 | 40.48 |
| VIT_04s0023g01840.t01 | Wine grape | cytosol, plastid | 40.53 | 38.33 |
| CDY45238 | Canola | nucleus | 36.12 | 34.75 |
| PGSC0003DMT400040074 | Potato | nucleus | 36.12 | 33.06 |
| Zm00001d009604_P001 | Maize | cytosol, nucleus, plastid | 29.52 | 33.0 |
| GSMUA_Achr6P27250_001 | Banana | cytosol, extracellular, nucleus | 33.48 | 32.76 |
| CDY30768 | Canola | nucleus | 32.6 | 32.46 |
| Solyc02g062760.2.1 | Tomato | nucleus | 35.68 | 31.89 |
| TraesCS3B01G269000.1 | Wheat | cytosol, extracellular, nucleus | 29.96 | 30.36 |
| Zm00001d043969_P001 | Maize | endoplasmic reticulum | 30.84 | 30.04 |
| GSMUA_Achr7P25620_001 | Banana | nucleus | 30.84 | 30.04 |
| TraesCS3D01G241100.1 | Wheat | cytosol, extracellular, nucleus | 30.4 | 30.0 |
| HORVU3Hr1G059870.2 | Barley | cytosol, extracellular, nucleus | 30.4 | 29.74 |
| Os05t0567900-00 | Rice | cytosol, extracellular, plastid | 32.6 | 29.6 |
| TraesCS3A01G240800.1 | Wheat | cytosol, extracellular, nucleus | 30.4 | 29.49 |
| KRH43324 | Soybean | nucleus | 17.62 | 29.41 |
| CDY25008 | Canola | nucleus | 12.78 | 29.0 |
| GSMUA_Achr3P31070_001 | Banana | cytosol, nucleus, plastid | 26.87 | 28.91 |
| EES19963 | Sorghum | mitochondrion, nucleus, vacuole | 29.07 | 28.82 |
| Os01t0662800-00 | Rice | cytosol, extracellular, nucleus | 30.4 | 28.51 |
| KXG33047 | Sorghum | extracellular | 30.4 | 28.28 |
| CDX87024 | Canola | nucleus | 12.78 | 28.16 |
| CDY68751 | Canola | cytosol, mitochondrion | 11.89 | 26.73 |
| CDX85400 | Canola | nucleus | 14.1 | 25.2 |
| CDY05639 | Canola | nucleus | 14.54 | 25.19 |
| CDX86241 | Canola | nucleus | 13.66 | 24.41 |
| CDY33918 | Canola | nucleus | 14.1 | 22.7 |
| CDY34933 | Canola | nucleus | 13.66 | 22.14 |
| CDX95897 | Canola | nucleus | 14.98 | 20.73 |
| CDX92103 | Canola | nucleus | 14.98 | 20.48 |
| CDY34429 | Canola | cytosol | 13.22 | 19.61 |
| CDX90545 | Canola | nucleus | 11.89 | 18.37 |
| CDX75893 | Canola | nucleus | 14.54 | 18.03 |
| CDX82388 | Canola | nucleus | 13.66 | 17.82 |
| CDX80603 | Canola | nucleus | 11.45 | 17.69 |
| CDY34981 | Canola | nucleus | 13.22 | 17.54 |
| CDY52723 | Canola | nucleus | 13.66 | 17.22 |
| CDY32214 | Canola | nucleus | 13.22 | 16.76 |
| CDY09717 | Canola | nucleus | 12.78 | 16.38 |
| CDX88593 | Canola | nucleus | 21.15 | 13.52 |
| CDY65439 | Canola | nucleus | 21.15 | 12.5 |
| CDY42753 | Canola | nucleus | 20.26 | 12.43 |
| CDY42752 | Canola | nucleus | 20.26 | 12.43 |
| CDY67979 | Canola | nucleus | 20.7 | 11.99 |
| CDY67546 | Canola | nucleus | 19.82 | 11.97 |
| CDY20709 | Canola | nucleus | 20.7 | 11.93 |
| CDX94365 | Canola | nucleus | 18.06 | 11.39 |
| CDY32755 | Canola | nucleus | 19.38 | 11.37 |
| CDX89358 | Canola | nucleus | 17.62 | 11.11 |
| CDY32891 | Canola | nucleus | 18.94 | 11.08 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:A0A078C6W9 | EnsemblPlants:CDX72587 | ProteinID:CDX72587 | ProteinID:CDX72587.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00100129001 | InterPro:IPR000679 | InterPro:IPR013088 | PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 |
| PANTHER:PTHR10071 | PANTHER:PTHR10071:SF305 | SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI0004EF3D46 | InterPro:Znf_GATA |
| InterPro:Znf_NHR/GATA | SEG:seg | : | : | : | : |
Description
BnaC07g46090D
Coordinates
chrLK031796:-:2060079..2061016
Molecular Weight (calculated)
25076.4 Da
IEP (calculated)
7.091
GRAVY (calculated)
-0.899
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MMGFSMFFSE NDGVHHSSAY ASVDCTLSLG TPSTRLCNDD DDRRFSSHTS NNMSNALGSW DFLHGGKKGG GGGGNNLLAR RCANCDTTST PLWRNGPRGP
101: KSLCNACGIR FKKEERREST ARNSGRNSTS GGVSTAAAGV PVSDHHGVTN YYYNNNNNNN NHYDSSSPWI HHQHQNTQRV PYYSPANNEY SFVDDVRDDN
201: NDLTSDPFLS WRLNVADRAS LVHDFPM
101: KSLCNACGIR FKKEERREST ARNSGRNSTS GGVSTAAAGV PVSDHHGVTN YYYNNNNNNN NHYDSSSPWI HHQHQNTQRV PYYSPANNEY SFVDDVRDDN
201: NDLTSDPFLS WRLNVADRAS LVHDFPM
001: MMGYQTNSNF SMFFSSENDD QNHHNYDPYN NFSSSTSVDC TLSLGTPSTR LDDHHRFSSA NSNNISGDFY IHGGNAKTSS YKKGGVAHSL PRRCASCDTT
101: STPLWRNGPK GPKSLCNACG IRFKKEERRA TARNLTISGG GSSAAEVPVE NSYNGGGNYY SHHHHHYASS SPSWAHQNTQ RVPYFSPVPE MEYPYVDNVT
201: ASSFMSWN
101: STPLWRNGPK GPKSLCNACG IRFKKEERRA TARNLTISGG GSSAAEVPVE NSYNGGGNYY SHHHHHYASS SPSWAHQNTQ RVPYFSPVPE MEYPYVDNVT
201: ASSFMSWN
Arabidopsis Description
GATA20HANL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWM7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.