Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY28683 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G56860.1 | CDY28683 | AT3G01320.1 | 19962994 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035633.1-P | Field mustard | nucleus | 76.4 | 100.0 |
| CDY67979 | Canola | nucleus | 95.69 | 96.17 |
| CDY32891 | Canola | nucleus | 81.22 | 82.47 |
| AT5G56860.1 | Thale cress | nucleus | 81.98 | 81.16 |
| CDY32755 | Canola | nucleus | 79.7 | 81.14 |
| CDY65439 | Canola | nucleus | 78.68 | 80.73 |
| CDX88593 | Canola | nucleus | 71.83 | 79.72 |
| CDY42752 | Canola | nucleus | 50.0 | 53.24 |
| CDY42753 | Canola | nucleus | 49.75 | 52.97 |
| CDY67546 | Canola | nucleus | 49.49 | 51.86 |
| CDX94365 | Canola | nucleus | 46.45 | 50.83 |
| CDX89358 | Canola | nucleus | 45.69 | 50.0 |
| CDY25008 | Canola | nucleus | 10.41 | 41.0 |
| KRH19153 | Soybean | nucleus | 31.73 | 39.81 |
| KRH02716 | Soybean | nucleus | 31.73 | 38.82 |
| CDX87024 | Canola | nucleus | 9.9 | 37.86 |
| GSMUA_Achr8P24880_001 | Banana | nucleus | 20.81 | 37.61 |
| CDY05639 | Canola | nucleus | 12.18 | 36.64 |
| CDX85400 | Canola | nucleus | 11.68 | 36.22 |
| CDX86241 | Canola | nucleus | 11.68 | 36.22 |
| KRH12382 | Soybean | nucleus | 28.68 | 35.87 |
| CDY33918 | Canola | nucleus | 11.93 | 33.33 |
| CDY68751 | Canola | cytosol, mitochondrion | 8.38 | 32.67 |
| KRH37384 | Soybean | nucleus | 27.66 | 32.34 |
| CDY34933 | Canola | nucleus | 11.42 | 32.14 |
| TraesCS7D01G359900.1 | Wheat | nucleus | 27.66 | 30.36 |
| TraesCS7A01G363100.1 | Wheat | nucleus | 27.41 | 30.34 |
| HORVU7Hr1G086810.1 | Barley | nucleus | 27.16 | 29.72 |
| CDY34429 | Canola | cytosol | 11.42 | 29.41 |
| TraesCS7B01G264800.1 | Wheat | nucleus | 26.9 | 29.36 |
| CDX90545 | Canola | nucleus | 10.91 | 29.25 |
| TraesCS6A01G185900.1 | Wheat | cytosol | 24.87 | 28.66 |
| TraesCS6D01G173000.1 | Wheat | cytosol | 24.62 | 28.36 |
| Zm00001d046354_P001 | Maize | nucleus | 26.4 | 28.11 |
| EER88552 | Sorghum | nucleus | 27.41 | 27.98 |
| TraesCS6B01G214900.1 | Wheat | cytosol | 24.11 | 27.78 |
| Os02t0220400-01 | Rice | nucleus | 24.87 | 27.76 |
| CDX92103 | Canola | nucleus | 11.68 | 27.71 |
| HORVU6Hr1G039720.2 | Barley | cytosol | 24.11 | 27.62 |
| Zm00001d016361_P001 | Maize | nucleus | 25.89 | 27.57 |
| CDY32214 | Canola | nucleus | 12.18 | 26.82 |
| Os06t0571800-02 | Rice | nucleus | 23.6 | 26.8 |
| CDY34981 | Canola | nucleus | 11.42 | 26.32 |
| CDX95897 | Canola | nucleus | 10.91 | 26.22 |
| CDY52723 | Canola | nucleus | 11.93 | 26.11 |
| CDX82388 | Canola | nucleus | 11.42 | 25.86 |
| CDX80603 | Canola | nucleus | 9.64 | 25.85 |
| KXG29816 | Sorghum | nucleus | 25.38 | 25.84 |
| CDY09717 | Canola | nucleus | 11.17 | 24.86 |
| CDX75893 | Canola | nucleus | 11.42 | 24.59 |
| CDY69687 | Canola | nucleus | 10.66 | 22.22 |
| CDY68627 | Canola | nucleus | 12.44 | 22.07 |
| CDX69237 | Canola | nucleus | 12.44 | 21.97 |
| CDY53079 | Canola | cytosol | 11.42 | 21.74 |
| CDY13040 | Canola | cytosol | 10.91 | 21.61 |
| CDY70754 | Canola | nucleus | 12.18 | 21.52 |
| CDY60289 | Canola | nucleus | 10.91 | 21.29 |
| CDY72649 | Canola | nucleus | 10.66 | 21.0 |
| CDX72587 | Canola | cytosol | 11.93 | 20.7 |
| CDY24779 | Canola | nucleus | 11.17 | 20.66 |
| CDY51221 | Canola | nucleus | 10.41 | 20.4 |
| CDX77958 | Canola | nucleus | 13.71 | 20.3 |
| CDY28986 | Canola | cytosol | 13.96 | 20.07 |
| CDX90680 | Canola | nucleus | 13.96 | 19.78 |
| CDY45238 | Canola | nucleus | 11.42 | 19.07 |
| CDX73777 | Canola | nucleus | 13.71 | 18.62 |
| CDY30768 | Canola | nucleus | 10.66 | 18.42 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:A0A078G5R1 | UniProt:A0A078G5R1 | EnsemblPlants:CDY20709 | ProteinID:CDY20709 |
| ProteinID:CDY20709.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00012910001 | InterPro:IPR000679 | InterPro:IPR013088 |
| PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF191 | SMART:SM00401 |
| SUPFAM:SSF57716 | UniParc:UPI0004EDFCE5 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg | : |
Description
BnaA02g08490DBnaA02g08490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G5R1]
Coordinates
chrLK032111:+:184699..186872
Molecular Weight (calculated)
44288.7 Da
IEP (calculated)
9.461
GRAVY (calculated)
-0.940
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSNFHYSID LNEDQNHHEQ PFLYPFGSSS SILHNQQPHH HHNHQVPSNS SSSISSLSSY LPFLINSQED HHVAYNNTYH ADHLHLSQPL KANMFNGGSS
101: SSYDHTVPKK ERRLKLTIRK KDYHDDRTDF PHQNPTKLNS GSDKWLMSPK MRLIKKTITN NKQRIDHTNS NDNNHKEDHY PLDHKTTFKE DHDEELKKVS
201: TRTNTAATTE KRCNTINENG YGNNNGVIRV CSDCNTTKTP LWRSGPRGPK SLCNACGIRQ RKARRAAMAA AVAAGDDQEV VAARLQQLPV KKKLQNKRKR
301: SNGGDKYNLS SPVVAKTKKC KLKEEEDDAA IVAGDSEISK STTSSGSSVL PNKFCFDDLT ILLSKSSAYQ QVFPQDEKEA AILLMALSYG MVHG
101: SSYDHTVPKK ERRLKLTIRK KDYHDDRTDF PHQNPTKLNS GSDKWLMSPK MRLIKKTITN NKQRIDHTNS NDNNHKEDHY PLDHKTTFKE DHDEELKKVS
201: TRTNTAATTE KRCNTINENG YGNNNGVIRV CSDCNTTKTP LWRSGPRGPK SLCNACGIRQ RKARRAAMAA AVAAGDDQEV VAARLQQLPV KKKLQNKRKR
301: SNGGDKYNLS SPVVAKTKKC KLKEEEDDAA IVAGDSEISK STTSSGSSVL PNKFCFDDLT ILLSKSSAYQ QVFPQDEKEA AILLMALSYG MVHG
001: MDSNFHYSID LNEDQNHHEQ PFFYPLGSSS SLHHHHHHHH HQVPSNSSSS SSSISSLSSY LPFLINSQED QHVAYNNTYH ADHLHLSQPL KAKMFVANGG
101: SSACDHMVPK KETRLKLTIR KKDHEDQPHP LHQNPTKPDS DSDKWLMSPK MRLIKKTITN NKQLIDQTNN NNHKESDHYP LNHKTNFDED HHEDLNFKNV
201: LTRKTTAATT ENRYNTINEN GYSNNNGVIR VCSDCNTTKT PLWRSGPRGP KSLCNACGIR QRKARRAAMA AAAAAGDQEV AVAPRVQQLP LKKKLQNKKK
301: RSNGGEKYNH SPPMVAKAKK CKIKEEEEKE MEAETVAGDS EISKSTTSSN SSISSNKFCF DDLTIMLSKS SAYQQVFPQD EKEAAVLLMA LSYGMVHG
101: SSACDHMVPK KETRLKLTIR KKDHEDQPHP LHQNPTKPDS DSDKWLMSPK MRLIKKTITN NKQLIDQTNN NNHKESDHYP LNHKTNFDED HHEDLNFKNV
201: LTRKTTAATT ENRYNTINEN GYSNNNGVIR VCSDCNTTKT PLWRSGPRGP KSLCNACGIR QRKARRAAMA AAAAAGDQEV AVAPRVQQLP LKKKLQNKKK
301: RSNGGEKYNH SPPMVAKAKK CKIKEEEEKE MEAETVAGDS EISKSTTSSN SSISSNKFCF DDLTIMLSKS SAYQQVFPQD EKEAAVLLMA LSYGMVHG
Arabidopsis Description
GATA21GATA transcription factor 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5HZ36]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.