Factsheet for Zm00001d046354_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88552	Sorghum	nucleus	88.92	85.23
TraesCS7D01G359900.1	Wheat	nucleus	65.41	67.41
TraesCS7A01G363100.1	Wheat	nucleus	64.59	67.13
HORVU7Hr1G086810.1	Barley	nucleus	65.14	66.94
TraesCS7B01G264800.1	Wheat	nucleus	64.32	65.93
Os06t0571800-02	Rice	nucleus	56.49	60.23
GSMUA_Achr7P09030_001	Banana	nucleus	21.35	50.64
Zm00001d016361_P001	Maize	nucleus	48.65	48.65
GSMUA_Achr2P16730_001	Banana	nucleus	24.32	43.27
VIT_11s0016g02210.t01	Wine grape	nucleus, plastid	29.19	34.95
VIT_04s0008g01290.t01	Wine grape	plastid	28.65	34.64
Solyc07g038160.2.1	Tomato	nucleus	21.89	30.45
KRH19153	Soybean	nucleus	25.68	30.25
Bra035633.1-P	Field mustard	nucleus	24.59	30.23
KRH02716	Soybean	nucleus	26.22	30.12
Zm00001d034751_P001	Maize	nucleus	13.24	30.06
AT4G26150.1	Thale cress	cytosol	27.03	28.41
PGSC0003DMT400011449	Potato	nucleus	21.89	28.32
Zm00001d037605_P001	Maize	nucleus	10.81	27.97
CDX94365	Canola	nucleus	26.49	27.22
PGSC0003DMT400000761	Potato	nucleus	21.08	27.18
KRH61505	Soybean	nucleus	21.35	27.05
KRH12382	Soybean	nucleus	22.97	26.98
Solyc12g008830.1.1	Tomato	nucleus	21.35	26.96
Zm00001d011771_P001	Maize	nucleus	14.05	26.67
Bra026461.1-P	Field mustard	nucleus	25.95	26.67
Zm00001d009193_P001	Maize	plastid	10.0	26.62
CDY32755	Canola	nucleus	27.84	26.61
Bra002788.1-P	Field mustard	nucleus	27.84	26.61
CDX88593	Canola	nucleus	25.41	26.48
CDY20709	Canola	nucleus	28.11	26.4
CDX89358	Canola	nucleus	25.68	26.39
CDY32891	Canola	nucleus	27.57	26.29
CDY67979	Canola	nucleus	27.84	26.28
AT5G56860.1	Thale cress	nucleus	27.84	25.88
Zm00001d040775_P001	Maize	nucleus	10.27	25.85
CDY42753	Canola	nucleus	25.68	25.68
CDY42752	Canola	nucleus	25.68	25.68
CDY67546	Canola	nucleus	25.68	25.27
CDY65439	Canola	nucleus	25.95	25.0
Bra006851.1-P	Field mustard	nucleus, plastid	25.95	25.0
Bra019118.1-P	Field mustard	nucleus	25.68	24.48
KRH15535	Soybean	nucleus	20.0	24.18
KRH05458	Soybean	nucleus	20.0	24.18
KRH37384	Soybean	nucleus	21.89	24.04
Zm00001d043969_P001	Maize	endoplasmic reticulum	13.51	21.46
Bra001644.1-P	Field mustard	nucleus	8.38	21.23
Zm00001d009604_P001	Maize	cytosol, nucleus, plastid	10.81	19.7
Zm00001d039113_P001	Maize	cytosol, mitochondrion, nucleus, plastid	11.35	14.79
Zm00001d009668_P001	Maize	mitochondrion, nucleus	10.0	13.7

Protein Annotations

EntrezGene:100191563	MapMan:15.5.1.3	Gene3D:3.30.50.10	ProteinID:AQL04118.1	UniProt:B4F991	EMBL:BT033679
EMBL:BT064595	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088	PFAM:PF00320
ScanProsite:PS00344	PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF287	SMART:SM00401	SUPFAM:SSF57716
UniParc:UPI00017B62EB	EnsemblPlantsGene:Zm00001d046354	EnsemblPlants:Zm00001d046354_P001	EnsemblPlants:Zm00001d046354_T001	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA
SEG:seg	:	:	:	:	:

Description

C2C2-GATA-transcription factor 29GATA transcription factor 20

Coordinates

chr9:+:83394090..83396208

Molecular Weight (calculated)

38981.2 Da

IEP (calculated)

8.280

GRAVY (calculated)

-0.285

Length

370 amino acids

Sequence
(BLAST)

001: MSAIYMSQLS TALPLMEGDH QDHHHHHQGH FQAFTLPKET PILFPFVISN SSASEGSLSY GSAADHHLLR QRHQAMLEPQ HMIGGSSTAT GNSVFSTPFP
101: TVESIRDDMI EPASYDPYDM GKLQVGGSMD ACSWTPAAAK MRITRKATAD PSAGKKPRRR AQAGYDDTMS GQPNLGVIRV CSDCNTTKTP LWRSGPCGPK
201: SLCNACGIRQ RKARRAMMAA ASGSVSAVPT DSGKASPSNA AVAAAAAHPK VKKEKRVDVD RSLPFKKRCK VVQQGHGAAV VVAAPAAATD SATVVQATAE
301: DGDDDTCPSR DLLVDDIGGL ISWSRSPAAP ASAAAATCSF RASPALPVQQ DEITDAAMLL MTLSCGLVRS

Best Arabidopsis Sequence Match ( AT5G56860.1 )
(BLAST)

001: MDSNFHYSID LNEDQNHHEQ PFFYPLGSSS SLHHHHHHHH HQVPSNSSSS SSSISSLSSY LPFLINSQED QHVAYNNTYH ADHLHLSQPL KAKMFVANGG
101: SSACDHMVPK KETRLKLTIR KKDHEDQPHP LHQNPTKPDS DSDKWLMSPK MRLIKKTITN NKQLIDQTNN NNHKESDHYP LNHKTNFDED HHEDLNFKNV
201: LTRKTTAATT ENRYNTINEN GYSNNNGVIR VCSDCNTTKT PLWRSGPRGP KSLCNACGIR QRKARRAAMA AAAAAGDQEV AVAPRVQQLP LKKKLQNKKK
301: RSNGGEKYNH SPPMVAKAKK CKIKEEEEKE MEAETVAGDS EISKSTTSSN SSISSNKFCF DDLTIMLSKS SAYQQVFPQD EKEAAVLLMA LSYGMVHG

Arabidopsis Description

GATA21GATA transcription factor 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5HZ36]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.