Factsheet for Zm00001d039113_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

mitochondrion 3
nucleus 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES20002	Sorghum	plastid	71.48	68.58
Zm00001d009668_P001	Maize	mitochondrion, nucleus	56.69	59.63
TraesCS1B01G448200.1	Wheat	plastid	40.14	52.53
TraesCS1A01G418200.1	Wheat	plastid	39.08	50.68
TraesCS1D01G425900.1	Wheat	plastid	38.73	50.23
HORVU1Hr1G091450.3	Barley	plastid	37.32	48.85
Os05t0578900-01	Rice	nucleus	47.18	48.03
Zm00001d009604_P001	Maize	cytosol, nucleus, plastid	26.41	36.95
Zm00001d043969_P001	Maize	endoplasmic reticulum	28.87	35.19
Zm00001d037605_P001	Maize	nucleus	10.56	20.98
Zm00001d034751_P001	Maize	nucleus	11.97	20.86
Zm00001d040775_P001	Maize	nucleus	10.56	20.41
Zm00001d009193_P001	Maize	plastid	9.86	20.14
Zm00001d011771_P001	Maize	nucleus	11.97	17.44
Zm00001d046354_P001	Maize	nucleus	14.79	11.35
Zm00001d016361_P001	Maize	nucleus	14.08	10.81

Protein Annotations

EntrezGene:103630771	MapMan:15.5.1.3	Gene3D:3.30.50.10	UniProt:A0A1D6MDM9	ProteinID:AQK88757.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088	PFAM:PF00320	ScanProsite:PS00344	PFscan:PS50114
PANTHER:PTHR10071	PANTHER:PTHR10071:SF292	SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI0001BA81F8	EnsemblPlantsGene:Zm00001d039113
EnsemblPlants:Zm00001d039113_P001	EnsemblPlants:Zm00001d039113_T001	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:

Description

tassel sheath1Tassel sheath1

Coordinates

chr6:-:170248013..170249485

Molecular Weight (calculated)

29955.0 Da

IEP (calculated)

8.205

GRAVY (calculated)

-0.351

Length

284 amino acids

Sequence
(BLAST)

001: MLRHCNTTTQ QQHQRHRHRQ SIPATALAPA TMPSTTFSLF SPLPCSTKAH QYAPADWFDD DDSNSAVIAT PPSPSSSSTG SVDCTLSLGT PSSRLAAPKQ
101: RPLPASSCGT MPWDVAAAAD QSCCCCRRRQ GSSSSSRPSV VVNKSAVMPC AGQDPLLVDR RCANCGTSST PLWRNGPCGP KSLCNACGIR FKKKERRAAA
201: TAAMDQGGCA YVAERAQYGA AAGRAYYGSC EGPAFPCDGG DVADAEAAPQ NFLAWRLDVV APAQAQAAAF AAVWPEQTTL FQYN

Best Arabidopsis Sequence Match ( AT4G36620.1 )
(BLAST)

001: MGFSMFFSPE NDVSHHSSPY ASVDCTLSLG TPSTRLCNED DERRFSSHTS DTIGWDFLNG SKKGGGGGGH NLLARRCANC DTTSTPLWRN GPRGPKSLCN
101: ACGIRFKKEE RRASTARNST SGGGSTAAGV PTLDHQASAN YYYNNNNQYA SSSPWHHQHN TQRVPYYSPA NNEYSYVDDV RVVDHDVTTD PFLSWRLNVA
201: DRTGLVHDFT M

Arabidopsis Description

GATA19Uncharacterized protein At4g36620 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVL8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.