Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG21349 | Sorghum | cytosol | 83.92 | 76.92 |
| TraesCS1D01G106100.1 | Wheat | cytosol | 70.63 | 69.18 |
| TraesCS1B01G126600.1 | Wheat | cytosol | 69.93 | 68.49 |
| TraesCS1A01G097300.1 | Wheat | cytosol | 67.83 | 61.01 |
| Zm00001d009193_P001 | Maize | plastid | 58.74 | 60.43 |
| Zm00001d040775_P001 | Maize | nucleus | 56.64 | 55.1 |
| KRH68462 | Soybean | cytosol | 28.67 | 51.25 |
| HORVU1Hr1G022710.3 | Barley | plastid | 68.53 | 45.37 |
| Solyc09g075610.2.1 | Tomato | plastid | 27.97 | 44.94 |
| Bra009926.1-P | Field mustard | cytosol | 23.78 | 43.04 |
| CDX87024 | Canola | nucleus | 30.77 | 42.72 |
| Bra036600.1-P | Field mustard | nucleus | 30.77 | 42.72 |
| KRG96744 | Soybean | cytosol, mitochondrion, nucleus | 24.48 | 42.17 |
| CDY25008 | Canola | nucleus | 29.37 | 42.0 |
| PGSC0003DMT400081417 | Potato | nucleus | 29.37 | 39.62 |
| AT5G26930.1 | Thale cress | cytosol | 32.87 | 39.17 |
| VIT_14s0060g01520.t01 | Wine grape | nucleus | 32.17 | 37.1 |
| GSMUA_Achr3P00700_001 | Banana | nucleus | 32.17 | 37.1 |
| CDX85400 | Canola | nucleus | 32.87 | 37.01 |
| Bra037421.1-P | Field mustard | nucleus | 32.17 | 36.22 |
| CDX86241 | Canola | nucleus | 32.17 | 36.22 |
| CDY68751 | Canola | cytosol, mitochondrion | 24.48 | 34.65 |
| CDY05639 | Canola | nucleus | 31.47 | 34.35 |
| VIT_05s0077g01450.t01 | Wine grape | nucleus | 34.97 | 32.68 |
| Zm00001d034751_P001 | Maize | nucleus | 37.06 | 32.52 |
| AT5G49300.1 | Thale cress | cytosol | 31.47 | 32.37 |
| GSMUA_Achr7P03800_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 31.47 | 31.69 |
| GSMUA_Achr8P33850_001 | Banana | nucleus | 32.87 | 31.54 |
| Bra020650.1-P | Field mustard | nucleus | 30.77 | 31.43 |
| CDY34429 | Canola | cytosol | 33.57 | 31.37 |
| CDX90545 | Canola | nucleus | 32.17 | 31.29 |
| CDY33918 | Canola | nucleus | 30.77 | 31.21 |
| GSMUA_Achr1P26550_001 | Banana | nucleus | 30.77 | 30.99 |
| GSMUA_Achr1P14780_001 | Banana | nucleus | 26.57 | 30.16 |
| KRH02314 | Soybean | nucleus | 29.37 | 30.0 |
| CDX80603 | Canola | nucleus | 30.77 | 29.93 |
| Bra022184.1-P | Field mustard | nucleus | 34.27 | 29.52 |
| CDX92103 | Canola | nucleus | 34.27 | 29.52 |
| AT3G06740.1 | Thale cress | nucleus | 30.07 | 28.86 |
| Solyc01g100220.2.1 | Tomato | nucleus | 30.07 | 28.86 |
| Bra040288.1-P | Field mustard | nucleus | 27.97 | 28.78 |
| CDY34981 | Canola | nucleus | 34.27 | 28.66 |
| PGSC0003DMT400011779 | Potato | nucleus | 33.57 | 28.57 |
| Solyc12g099370.1.1 | Tomato | nucleus | 33.57 | 28.57 |
| CDY34933 | Canola | nucleus | 27.97 | 28.57 |
| PGSC0003DMT400063771 | Potato | nucleus | 30.07 | 28.48 |
| CDX82388 | Canola | nucleus | 34.27 | 28.16 |
| Bra021209.1-P | Field mustard | nucleus | 33.57 | 28.07 |
| CDY52723 | Canola | nucleus | 34.97 | 27.78 |
| CDX95897 | Canola | nucleus | 31.47 | 27.44 |
| Bra033533.1-P | Field mustard | nucleus | 34.27 | 27.37 |
| CDY32214 | Canola | nucleus | 34.27 | 27.37 |
| CDX75893 | Canola | nucleus | 34.97 | 27.32 |
| Bra012742.1-P | Field mustard | nucleus | 31.47 | 26.95 |
| AT3G16870.1 | Thale cress | nucleus | 35.66 | 26.84 |
| Zm00001d011771_P001 | Maize | nucleus | 36.36 | 26.67 |
| KRH50773 | Soybean | nucleus | 29.37 | 26.58 |
| CDY09717 | Canola | nucleus | 32.17 | 25.99 |
| AT4G16141.1 | Thale cress | cytosol | 32.87 | 23.86 |
| Solyc05g054400.2.1 | Tomato | nucleus | 32.17 | 23.35 |
| PGSC0003DMT400060241 | Potato | nucleus | 32.17 | 23.35 |
| Zm00001d009604_P001 | Maize | cytosol, nucleus, plastid | 22.38 | 15.76 |
| Zm00001d043969_P001 | Maize | endoplasmic reticulum | 23.78 | 14.59 |
| Zm00001d009668_P001 | Maize | mitochondrion, nucleus | 23.08 | 12.22 |
| Zm00001d016361_P001 | Maize | nucleus | 27.97 | 10.81 |
| Zm00001d046354_P001 | Maize | nucleus | 27.97 | 10.81 |
| Zm00001d039113_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 20.98 | 10.56 |
Protein Annotations
| EntrezGene:103630069 | MapMan:15.5.1.3 | Gene3D:3.30.50.10 | ProteinID:AQK84431.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046872 |
| InterPro:IPR000679 | InterPro:IPR013088 | UniProt:K7UI23 | EMBL:KJ728012 | PFAM:PF00320 | ScanProsite:PS00344 |
| PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF198 | SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI00022207E3 |
| EnsemblPlantsGene:Zm00001d037605 | EnsemblPlants:Zm00001d037605_P001 | EnsemblPlants:Zm00001d037605_T001 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg |
Description
C2C2-GATA-transcription factor 12GATA transcription factor 16
Coordinates
chr6:-:131419763..131421563
Molecular Weight (calculated)
15575.9 Da
IEP (calculated)
10.605
GRAVY (calculated)
-0.628
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMDSAEHQK VMGIAPAAAP AAEAGRPCCV ECRTTATPMW RGGPTGPRSL CNACGIRYRK KRRQELGLDS AKKPQQNQRP PPPQQQQQQE DHCPATSAVA
101: VRDNTKSSRL QVVKKRRVLM GVEEAAVLLM ALSSSSRSTL LHG
101: VRDNTKSSRL QVVKKRRVLM GVEEAAVLLM ALSSSSRSTL LHG
001: MDPRKLLSCS SSYVSVRMKE EKGTIRCCSE CKTTKTPMWR GGPTGPKSLC NACGIRHRKQ RRSELLGIHI IRSHKSLASK KINLLSSSHG GVAVKKRRSL
101: KEEEQAALCL LLLSCSSVLA
101: KEEEQAALCL LLLSCSSVLA
Arabidopsis Description
GATA23GATA transcription factor 23 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC59]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.