Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G106100.1 | Wheat | cytosol | 87.42 | 95.21 |
| TraesCS1B01G126600.1 | Wheat | cytosol | 85.53 | 93.15 |
| Zm00001d037605_P001 | Maize | nucleus | 61.01 | 67.83 |
| Os01t0343300-01 | Rice | nucleus | 52.2 | 63.36 |
| HORVU1Hr1G022710.3 | Barley | plastid | 83.02 | 61.11 |
| KXG21349 | Sorghum | cytosol | 59.75 | 60.9 |
| Os05t0155400-01 | Rice | mitochondrion, nucleus, vacuole | 67.92 | 55.96 |
| KRH68462 | Soybean | cytosol | 24.53 | 48.75 |
| Solyc09g075610.2.1 | Tomato | plastid | 25.79 | 46.07 |
| Bra009926.1-P | Field mustard | cytosol | 20.75 | 41.77 |
| KRG96744 | Soybean | cytosol, mitochondrion, nucleus | 20.75 | 39.76 |
| Bra036600.1-P | Field mustard | nucleus | 25.16 | 38.84 |
| CDX87024 | Canola | nucleus | 25.16 | 38.84 |
| PGSC0003DMT400081417 | Potato | nucleus | 25.79 | 38.68 |
| CDY25008 | Canola | nucleus | 23.9 | 38.0 |
| AT5G26930.1 | Thale cress | cytosol | 27.04 | 35.83 |
| GSMUA_Achr3P00700_001 | Banana | nucleus | 27.04 | 34.68 |
| VIT_14s0060g01520.t01 | Wine grape | nucleus | 25.79 | 33.06 |
| CDY68751 | Canola | cytosol, mitochondrion | 20.75 | 32.67 |
| CDX86241 | Canola | nucleus | 25.16 | 31.5 |
| CDX85400 | Canola | nucleus | 25.16 | 31.5 |
| Bra037421.1-P | Field mustard | nucleus | 25.16 | 31.5 |
| CDY05639 | Canola | nucleus | 24.53 | 29.77 |
| GSMUA_Achr8P33850_001 | Banana | nucleus | 27.67 | 29.53 |
| GSMUA_Achr1P14780_001 | Banana | nucleus | 23.27 | 29.37 |
| Solyc12g099370.1.1 | Tomato | nucleus | 30.82 | 29.17 |
| PGSC0003DMT400011779 | Potato | nucleus | 30.82 | 29.17 |
| GSMUA_Achr7P03800_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 25.79 | 28.87 |
| Solyc01g100220.2.1 | Tomato | nucleus | 27.04 | 28.86 |
| CDX90545 | Canola | nucleus | 26.42 | 28.57 |
| PGSC0003DMT400063771 | Potato | nucleus | 27.04 | 28.48 |
| GSMUA_Achr1P26550_001 | Banana | nucleus | 25.16 | 28.17 |
| VIT_05s0077g01450.t01 | Wine grape | nucleus | 27.04 | 28.1 |
| CDY34429 | Canola | cytosol | 26.42 | 27.45 |
| AT5G49300.1 | Thale cress | cytosol | 23.9 | 27.34 |
| CDX80603 | Canola | nucleus | 25.16 | 27.21 |
| Bra020650.1-P | Field mustard | nucleus | 23.9 | 27.14 |
| CDY33918 | Canola | nucleus | 23.9 | 26.95 |
| Bra040288.1-P | Field mustard | nucleus | 23.27 | 26.62 |
| KRH02314 | Soybean | nucleus | 23.27 | 26.43 |
| CDY34933 | Canola | nucleus | 23.27 | 26.43 |
| CDX92103 | Canola | nucleus | 27.04 | 25.9 |
| Bra022184.1-P | Field mustard | nucleus | 27.04 | 25.9 |
| Bra012742.1-P | Field mustard | nucleus | 27.04 | 25.75 |
| CDX82388 | Canola | nucleus | 27.67 | 25.29 |
| CDY34981 | Canola | nucleus | 27.04 | 25.15 |
| CDX75893 | Canola | nucleus | 28.93 | 25.14 |
| TraesCS3A01G538400.1 | Wheat | nucleus | 26.42 | 25.0 |
| CDX95897 | Canola | nucleus | 25.79 | 25.0 |
| PGSC0003DMT400060241 | Potato | nucleus | 30.82 | 24.87 |
| Solyc05g054400.2.1 | Tomato | nucleus | 30.82 | 24.87 |
| AT3G06740.1 | Thale cress | nucleus | 23.27 | 24.83 |
| Bra021209.1-P | Field mustard | nucleus | 26.42 | 24.56 |
| CDY52723 | Canola | nucleus | 27.67 | 24.44 |
| CDY32214 | Canola | nucleus | 27.04 | 24.02 |
| Bra033533.1-P | Field mustard | nucleus | 27.04 | 24.02 |
| TraesCS4A01G364700.1 | Wheat | nucleus | 27.04 | 23.76 |
| CDY09717 | Canola | nucleus | 26.42 | 23.73 |
| KRH50773 | Soybean | nucleus | 23.27 | 23.42 |
| AT3G16870.1 | Thale cress | nucleus | 27.67 | 23.16 |
| AT4G16141.1 | Thale cress | cytosol | 28.3 | 22.84 |
| TraesCS1A01G418200.1 | Wheat | plastid | 20.13 | 14.61 |
| TraesCS3A01G240800.1 | Wheat | cytosol, extracellular, nucleus | 20.75 | 14.1 |
| TraesCS7A01G363100.1 | Wheat | nucleus | 25.16 | 11.24 |
| TraesCS6A01G185900.1 | Wheat | cytosol | 23.9 | 11.11 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR000679 | InterPro:IPR013088 | PFAM:PF00320 |
| ScanProsite:PS00344 | PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF240 | SMART:SM00401 | SUPFAM:SSF57716 |
| EnsemblPlantsGene:TraesCS1A01G097300 | EnsemblPlants:TraesCS1A01G097300.1 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | TIGR:cd00202 | SEG:seg |
Description
No Description!
Coordinates
chr1A:-:93401939..93403931
Molecular Weight (calculated)
17490.7 Da
IEP (calculated)
9.419
GRAVY (calculated)
-0.740
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFSASEFVG TFNYVVATMV IGVAPAAGEG GRMCCVECRT TTTPMWRSGP TGPRTLCNAC GIRYRKKRRQ ELGLDNKPQN QQLNQQQQHQ QQQQQQQQQQ
101: REDHGEATSA VKDSSSSSNN KSSNLQVVKK KRTVSMGVEE AAFLLMALSS SSTPPLLHG
101: REDHGEATSA VKDSSSSSNN KSSNLQVVKK KRTVSMGVEE AAFLLMALSS SSTPPLLHG
001: MDPRKLLSCS SSYVSVRMKE EKGTIRCCSE CKTTKTPMWR GGPTGPKSLC NACGIRHRKQ RRSELLGIHI IRSHKSLASK KINLLSSSHG GVAVKKRRSL
101: KEEEQAALCL LLLSCSSVLA
101: KEEEQAALCL LLLSCSSVLA
Arabidopsis Description
GATA23GATA transcription factor 23 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC59]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.