Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95897 | Canola | nucleus | 68.95 | 79.88 |
| CDX82388 | Canola | nucleus | 72.11 | 78.74 |
| CDY34981 | Canola | nucleus | 70.53 | 78.36 |
| CDX92103 | Canola | nucleus | 68.42 | 78.31 |
| CDX75893 | Canola | nucleus | 75.26 | 78.14 |
| Bra021209.1-P | Field mustard | nucleus | 70.0 | 77.78 |
| Bra022184.1-P | Field mustard | nucleus | 67.89 | 77.71 |
| CDY52723 | Canola | nucleus | 71.58 | 75.56 |
| AT4G16141.1 | Thale cress | cytosol | 64.21 | 61.93 |
| AT5G49300.1 | Thale cress | cytosol | 36.32 | 49.64 |
| GSMUA_Achr3P00700_001 | Banana | nucleus | 29.47 | 45.16 |
| AT3G06740.1 | Thale cress | nucleus | 35.26 | 44.97 |
| AT5G26930.1 | Thale cress | cytosol | 26.32 | 41.67 |
| GSMUA_Achr8P33850_001 | Banana | nucleus | 32.11 | 40.94 |
| Solyc12g099370.1.1 | Tomato | nucleus | 35.26 | 39.88 |
| PGSC0003DMT400011779 | Potato | nucleus | 35.26 | 39.88 |
| GSMUA_Achr1P26550_001 | Banana | nucleus | 28.95 | 38.73 |
| Os01t0343300-01 | Rice | nucleus | 26.32 | 38.17 |
| Solyc05g054400.2.1 | Tomato | nucleus | 38.95 | 37.56 |
| KXG32453 | Sorghum | nucleus | 24.21 | 36.8 |
| GSMUA_Achr7P03800_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 27.37 | 36.62 |
| PGSC0003DMT400060241 | Potato | nucleus | 37.89 | 36.55 |
| Os01t0976800-01 | Rice | nucleus | 26.84 | 35.92 |
| Zm00001d037605_P001 | Maize | nucleus | 26.84 | 35.66 |
| EER93149 | Sorghum | nucleus | 28.95 | 35.03 |
| GSMUA_Achr1P14780_001 | Banana | nucleus | 23.16 | 34.92 |
| Zm00001d009193_P001 | Maize | plastid | 25.26 | 34.53 |
| HORVU5Hr1G116310.1 | Barley | nucleus | 28.95 | 33.95 |
| TraesCS5D01G508800.1 | Wheat | nucleus | 28.42 | 33.33 |
| TraesCS3A01G538400.1 | Wheat | nucleus | 29.47 | 33.33 |
| Zm00001d034751_P001 | Maize | nucleus | 28.42 | 33.13 |
| Zm00001d040775_P001 | Maize | nucleus | 24.74 | 31.97 |
| TraesCS5B01G508800.1 | Wheat | nucleus | 27.89 | 31.74 |
| KXG21349 | Sorghum | cytosol | 25.79 | 31.41 |
| TraesCS3D01G544000.1 | Wheat | nucleus | 29.47 | 31.28 |
| TraesCS3B01G603900.1 | Wheat | nucleus | 28.95 | 30.56 |
| TraesCS1B01G126600.1 | Wheat | cytosol | 23.16 | 30.14 |
| TraesCS1D01G106100.1 | Wheat | cytosol | 23.16 | 30.14 |
| HORVU6Hr1G093630.3 | Barley | mitochondrion | 21.05 | 29.85 |
| Zm00001d011771_P001 | Maize | nucleus | 30.0 | 29.23 |
| TraesCS1A01G097300.1 | Wheat | cytosol | 23.16 | 27.67 |
| EES04307 | Sorghum | nucleus | 31.58 | 27.65 |
| TraesCS4A01G364700.1 | Wheat | nucleus | 26.32 | 27.62 |
| Os05t0155400-01 | Rice | mitochondrion, nucleus, vacuole | 26.84 | 26.42 |
| HORVU1Hr1G022710.3 | Barley | plastid | 23.68 | 20.83 |
| AT4G36620.1 | Thale cress | cytosol | 16.84 | 15.17 |
| AT2G18380.1 | Thale cress | cytosol | 16.32 | 14.9 |
| AT4G26150.1 | Thale cress | cytosol | 26.32 | 14.2 |
| AT3G50870.1 | Thale cress | cytosol | 19.47 | 12.54 |
| AT5G56860.1 | Thale cress | nucleus | 24.74 | 11.81 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | EntrezGene:820942 | UniProt:A0A178V8Q8 | ProteinID:AEE75878.1 | EMBL:AK229178 |
| ArrayExpress:AT3G16870 | EnsemblPlantsGene:AT3G16870 | RefSeq:AT3G16870 | TAIR:AT3G16870 | RefSeq:AT3G16870-TAIR-G | EnsemblPlants:AT3G16870.1 |
| TAIR:AT3G16870.1 | ProteinID:BAB03075.1 | EMBL:BT010844 | EMBL:BT012611 | Symbol:GATA17 | GO:GO:0000977 |
| GO:GO:0001085 | GO:GO:0001228 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003682 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005667 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006366 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 |
| GO:GO:0043565 | GO:GO:0045944 | GO:GO:0046872 | InterPro:IPR000679 | InterPro:IPR013088 | RefSeq:NP_188312.1 |
| ProteinID:OAP02286.1 | PFAM:PF00320 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| ScanProsite:PS00344 | PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF306 | UniProt:Q0WPA1 | UniProt:Q9LIB5 |
| SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI000009D58F | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg |
Description
GATA17Uncharacterized protein At3g16870 [Source:UniProtKB/TrEMBL;Acc:Q0WPA1]
Coordinates
chr3:-:5763497..5764760
Molecular Weight (calculated)
20611.4 Da
IEP (calculated)
9.882
GRAVY (calculated)
-0.845
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEGSEDTKT KLDSAGELSD VDNENCSSSG SGGGSSSGDT KRTCVDCGTI RTPLWRGGPA GPKSLCNACG IKSRKKRQAA LGMRSEEKKK NRKSNCNNDL
101: NLDHRNAKKY KINIVDDGKI DIDDDPKICN NKRSSSSSSN KGVSKFLDLG FKVPVMKRSA VEKKRLWRKL GEEERAAVLL MALSCSSVYA
101: NLDHRNAKKY KINIVDDGKI DIDDDPKICN NKRSSSSSSN KGVSKFLDLG FKVPVMKRSA VEKKRLWRKL GEEERAAVLL MALSCSSVYA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.