Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009926.1-P | Field mustard | cytosol | 50.83 | 77.22 |
| CDX87024 | Canola | nucleus | 65.83 | 76.7 |
| Bra036600.1-P | Field mustard | nucleus | 65.0 | 75.73 |
| CDY25008 | Canola | nucleus | 62.5 | 75.0 |
| CDY68751 | Canola | cytosol, mitochondrion | 51.67 | 61.39 |
| CDX80603 | Canola | nucleus | 70.83 | 57.82 |
| AT5G49300.1 | Thale cress | cytosol | 40.83 | 35.25 |
| GSMUA_Achr3P00700_001 | Banana | nucleus | 35.83 | 34.68 |
| KXG32453 | Sorghum | nucleus | 35.0 | 33.6 |
| GSMUA_Achr1P26550_001 | Banana | nucleus | 39.17 | 33.1 |
| Zm00001d009193_P001 | Maize | plastid | 38.33 | 33.09 |
| AT3G06740.1 | Thale cress | nucleus | 40.83 | 32.89 |
| Zm00001d037605_P001 | Maize | nucleus | 39.17 | 32.87 |
| Os01t0343300-01 | Rice | nucleus | 35.83 | 32.82 |
| GSMUA_Achr7P03800_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 38.33 | 32.39 |
| GSMUA_Achr8P33850_001 | Banana | nucleus | 39.17 | 31.54 |
| Os01t0976800-01 | Rice | nucleus | 36.67 | 30.99 |
| GSMUA_Achr1P14780_001 | Banana | nucleus | 32.5 | 30.95 |
| Zm00001d040775_P001 | Maize | nucleus | 37.5 | 30.61 |
| EER93149 | Sorghum | nucleus | 39.17 | 29.94 |
| Solyc01g100220.2.1 | Tomato | nucleus | 36.67 | 29.53 |
| KXG21349 | Sorghum | cytosol | 38.33 | 29.49 |
| TraesCS1D01G106100.1 | Wheat | cytosol | 35.83 | 29.45 |
| TraesCS1B01G126600.1 | Wheat | cytosol | 35.83 | 29.45 |
| Zm00001d034751_P001 | Maize | nucleus | 40.0 | 29.45 |
| PGSC0003DMT400063771 | Potato | nucleus | 36.67 | 29.14 |
| HORVU5Hr1G116310.1 | Barley | nucleus | 36.67 | 27.16 |
| TraesCS1A01G097300.1 | Wheat | cytosol | 35.83 | 27.04 |
| AT3G16870.1 | Thale cress | nucleus | 41.67 | 26.32 |
| TraesCS3A01G538400.1 | Wheat | nucleus | 36.67 | 26.19 |
| TraesCS5D01G508800.1 | Wheat | nucleus | 35.0 | 25.93 |
| TraesCS5B01G508800.1 | Wheat | nucleus | 35.0 | 25.15 |
| AT4G16141.1 | Thale cress | cytosol | 40.83 | 24.87 |
| TraesCS3D01G544000.1 | Wheat | nucleus | 36.67 | 24.58 |
| TraesCS3B01G603900.1 | Wheat | nucleus | 36.67 | 24.44 |
| Os05t0155400-01 | Rice | mitochondrion, nucleus, vacuole | 39.17 | 24.35 |
| TraesCS4A01G364700.1 | Wheat | nucleus | 34.17 | 22.65 |
| HORVU6Hr1G093630.3 | Barley | mitochondrion | 25.0 | 22.39 |
| Zm00001d011771_P001 | Maize | nucleus | 35.83 | 22.05 |
| EES04307 | Sorghum | nucleus | 37.5 | 20.74 |
| HORVU1Hr1G022710.3 | Barley | plastid | 35.83 | 19.91 |
| AT2G18380.1 | Thale cress | cytosol | 23.33 | 13.46 |
| AT4G36620.1 | Thale cress | cytosol | 23.33 | 13.27 |
| AT4G26150.1 | Thale cress | cytosol | 33.33 | 11.36 |
| AT5G56860.1 | Thale cress | nucleus | 34.17 | 10.3 |
| AT3G50870.1 | Thale cress | cytosol | 25.0 | 10.17 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | EntrezGene:832751 | ProteinID:AAB61058.1 | EMBL:AB493761 | ProteinID:AED93628.1 |
| ArrayExpress:AT5G26930 | EnsemblPlantsGene:AT5G26930 | RefSeq:AT5G26930 | TAIR:AT5G26930 | RefSeq:AT5G26930-TAIR-G | EnsemblPlants:AT5G26930.1 |
| TAIR:AT5G26930.1 | EMBL:AY086778 | EMBL:BT024789 | UniProt:C0SVQ8 | EMBL:DQ446989 | EMBL:DQ653310 |
| Symbol:GATA23 | GO:GO:0000977 | GO:GO:0001085 | GO:GO:0001228 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003682 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005667 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006366 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009058 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0030154 |
| GO:GO:0043565 | GO:GO:0045944 | GO:GO:0046872 | GO:GO:0048527 | InterPro:IPR000679 | InterPro:IPR013088 |
| RefSeq:NP_198045.1 | PFAM:PF00320 | PO:PO:0000036 | PO:PO:0000052 | PO:PO:0005028 | PO:PO:0005352 |
| PO:PO:0006036 | PO:PO:0006203 | PO:PO:0008003 | PO:PO:0009005 | PO:PO:0020139 | ScanProsite:PS00344 |
| PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF306 | UniProt:Q8LC59 | SMART:SM00401 | SUPFAM:SSF57716 |
| UniParc:UPI00001625DA | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg | : | : |
Description
GATA23GATA transcription factor 23 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC59]
Coordinates
chr5:+:9479424..9480200
Molecular Weight (calculated)
13239.4 Da
IEP (calculated)
10.740
GRAVY (calculated)
-0.360
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPRKLLSCS SSYVSVRMKE EKGTIRCCSE CKTTKTPMWR GGPTGPKSLC NACGIRHRKQ RRSELLGIHI IRSHKSLASK KINLLSSSHG GVAVKKRRSL
101: KEEEQAALCL LLLSCSSVLA
101: KEEEQAALCL LLLSCSSVLA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.