Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, vacuole
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 2
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G106100.1 | Wheat | cytosol | 56.99 | 75.34 |
| TraesCS1B01G126600.1 | Wheat | cytosol | 56.99 | 75.34 |
| Os01t0343300-01 | Rice | nucleus | 46.11 | 67.94 |
| TraesCS1A01G097300.1 | Wheat | cytosol | 55.96 | 67.92 |
| HORVU1Hr1G022710.3 | Barley | plastid | 62.69 | 56.02 |
| KRH68462 | Soybean | cytosol | 20.21 | 48.75 |
| Solyc09g075610.2.1 | Tomato | plastid | 22.28 | 48.31 |
| Bra009926.1-P | Field mustard | cytosol | 18.65 | 45.57 |
| CDX87024 | Canola | nucleus | 22.8 | 42.72 |
| Bra036600.1-P | Field mustard | nucleus | 22.8 | 42.72 |
| CDY25008 | Canola | nucleus | 21.76 | 42.0 |
| PGSC0003DMT400081417 | Potato | nucleus | 22.28 | 40.57 |
| KRG96744 | Soybean | cytosol, mitochondrion, nucleus | 17.1 | 39.76 |
| AT5G26930.1 | Thale cress | cytosol | 24.35 | 39.17 |
| Bra037421.1-P | Field mustard | nucleus | 24.35 | 37.01 |
| CDX86241 | Canola | nucleus | 24.35 | 37.01 |
| CDY68751 | Canola | cytosol, mitochondrion | 19.17 | 36.63 |
| CDX85400 | Canola | nucleus | 23.83 | 36.22 |
| VIT_14s0060g01520.t01 | Wine grape | nucleus | 22.8 | 35.48 |
| GSMUA_Achr3P00700_001 | Banana | nucleus | 22.28 | 34.68 |
| Os01t0976800-01 | Rice | nucleus | 25.39 | 34.51 |
| CDY05639 | Canola | nucleus | 22.8 | 33.59 |
| VIT_05s0077g01450.t01 | Wine grape | nucleus | 25.39 | 32.03 |
| AT5G49300.1 | Thale cress | cytosol | 22.8 | 31.65 |
| PGSC0003DMT400011779 | Potato | nucleus | 27.46 | 31.55 |
| Solyc12g099370.1.1 | Tomato | nucleus | 27.46 | 31.55 |
| Bra020650.1-P | Field mustard | nucleus | 22.28 | 30.71 |
| CDY33918 | Canola | nucleus | 22.28 | 30.5 |
| GSMUA_Achr1P26550_001 | Banana | nucleus | 22.28 | 30.28 |
| GSMUA_Achr7P03800_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 22.28 | 30.28 |
| GSMUA_Achr8P33850_001 | Banana | nucleus | 23.32 | 30.2 |
| Solyc01g100220.2.1 | Tomato | nucleus | 23.32 | 30.2 |
| CDX90545 | Canola | nucleus | 22.8 | 29.93 |
| CDX80603 | Canola | nucleus | 22.8 | 29.93 |
| PGSC0003DMT400063771 | Potato | nucleus | 23.32 | 29.8 |
| Bra022184.1-P | Field mustard | nucleus | 25.39 | 29.52 |
| CDX92103 | Canola | nucleus | 25.39 | 29.52 |
| Bra040288.1-P | Field mustard | nucleus | 21.24 | 29.5 |
| CDY34429 | Canola | cytosol | 23.32 | 29.41 |
| CDX82388 | Canola | nucleus | 26.42 | 29.31 |
| CDY34933 | Canola | nucleus | 21.24 | 29.29 |
| KRH02314 | Soybean | nucleus | 21.24 | 29.29 |
| CDX75893 | Canola | nucleus | 27.46 | 28.96 |
| CDX95897 | Canola | nucleus | 24.35 | 28.66 |
| GSMUA_Achr1P14780_001 | Banana | nucleus | 18.65 | 28.57 |
| AT3G06740.1 | Thale cress | nucleus | 21.76 | 28.19 |
| CDY34981 | Canola | nucleus | 24.87 | 28.07 |
| Bra021209.1-P | Field mustard | nucleus | 24.35 | 27.49 |
| CDY52723 | Canola | nucleus | 25.39 | 27.22 |
| Bra012742.1-P | Field mustard | nucleus | 23.32 | 26.95 |
| AT3G16870.1 | Thale cress | nucleus | 26.42 | 26.84 |
| CDY32214 | Canola | nucleus | 24.35 | 26.26 |
| Bra033533.1-P | Field mustard | nucleus | 24.35 | 26.26 |
| KRH50773 | Soybean | nucleus | 21.24 | 25.95 |
| PGSC0003DMT400060241 | Potato | nucleus | 26.42 | 25.89 |
| Solyc05g054400.2.1 | Tomato | nucleus | 26.42 | 25.89 |
| CDY09717 | Canola | nucleus | 23.32 | 25.42 |
| AT4G16141.1 | Thale cress | cytosol | 24.87 | 24.37 |
| Os01t0662800-00 | Rice | cytosol, extracellular, nucleus | 16.58 | 13.22 |
| Os05t0578900-01 | Rice | nucleus | 18.13 | 12.54 |
| Os05t0567900-00 | Rice | cytosol, extracellular, plastid | 15.03 | 11.6 |
| Os02t0220400-01 | Rice | nucleus | 19.69 | 10.76 |
| Os06t0571800-02 | Rice | nucleus | 19.17 | 10.66 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | ProteinID:BAF16605.2 | ProteinID:BAS92356.1 | GO:GO:0000977 | GO:GO:0001085 |
| GO:GO:0001228 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003682 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005667 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006366 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0045944 |
| GO:GO:0046872 | InterPro:IPR000679 | InterPro:IPR013088 | EnsemblPlantsGene:Os05g0155400 | EnsemblPlants:Os05t0155400-01 | PFAM:PF00320 |
| ScanProsite:PS00344 | PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF240 | UniProt:Q0DKL8 | SMART:SM00401 |
| SUPFAM:SSF57716 | UniParc:UPI0001B6648C | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg | : |
Description
GATA TRANSCRIPTION FACTOR 13Zinc finger, NHR/GATA-type domain containing protein. (Os05t0155400-01)
Coordinates
chr5:-:3245448..3247629
Molecular Weight (calculated)
21217.2 Da
IEP (calculated)
10.096
GRAVY (calculated)
-0.661
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: NYSLLFSPLL LPFAPRNAAK LRFACLHATI CARHSDRSID RSMGSSDQKV IGIAAAAAAA AEEAGRRCCV ECGATTTPMW RGGPTGPRSL CNACGIRYRK
101: KRRQELGLDK KQQQEHHPHH HQQQQQQYQR QQQQQQQEDH SDAASSVKDS SSSSSNKSSS LQVVKKRRVL MGVEEAAILL MALSSSSPTL LHG
101: KRRQELGLDK KQQQEHHPHH HQQQQQQYQR QQQQQQQEDH SDAASSVKDS SSSSSNKSSS LQVVKKRRVL MGVEEAAILL MALSSSSPTL LHG
001: MDPRKLLSCS SSYVSVRMKE EKGTIRCCSE CKTTKTPMWR GGPTGPKSLC NACGIRHRKQ RRSELLGIHI IRSHKSLASK KINLLSSSHG GVAVKKRRSL
101: KEEEQAALCL LLLSCSSVLA
101: KEEEQAALCL LLLSCSSVLA
Arabidopsis Description
GATA23GATA transcription factor 23 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC59]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.