Factsheet for VIT_14s0060g01520.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68462	Soybean	cytosol	50.81	78.75
KRG96744	Soybean	cytosol, mitochondrion, nucleus	45.16	67.47
VIT_05s0077g01450.t01	Wine grape	nucleus	56.45	45.75
GSMUA_Achr3P00700_001	Banana	nucleus	45.16	45.16
GSMUA_Achr1P14780_001	Banana	nucleus	42.74	42.06
Os01t0976800-01	Rice	nucleus	47.58	41.55
GSMUA_Achr7P03800_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	45.97	40.14
GSMUA_Achr1P26550_001	Banana	nucleus	44.35	38.73
EER93149	Sorghum	nucleus	48.39	38.22
GSMUA_Achr8P33850_001	Banana	nucleus	45.16	37.58
Zm00001d034751_P001	Maize	nucleus	49.19	37.42
HORVU5Hr1G116310.1	Barley	nucleus	47.58	36.42
TraesCS5D01G508800.1	Wheat	nucleus	47.58	36.42
TraesCS5B01G508800.1	Wheat	nucleus	47.58	35.33
TraesCS3A01G538400.1	Wheat	nucleus	46.77	34.52
KXG32453	Sorghum	nucleus	33.87	33.6
TraesCS3D01G544000.1	Wheat	nucleus	46.77	32.4
TraesCS3B01G603900.1	Wheat	nucleus	46.77	32.22
Zm00001d037605_P001	Maize	nucleus	37.1	32.17
Os01t0343300-01	Rice	nucleus	33.87	32.06
TraesCS4A01G364700.1	Wheat	nucleus	45.16	30.94
Zm00001d009193_P001	Maize	plastid	34.68	30.94
HORVU6Hr1G093630.3	Barley	mitochondrion	33.06	30.6
KXG21349	Sorghum	cytosol	36.29	28.85
TraesCS1D01G106100.1	Wheat	cytosol	33.06	28.08
TraesCS1B01G126600.1	Wheat	cytosol	33.06	28.08
Zm00001d040775_P001	Maize	nucleus	33.06	27.89
Zm00001d011771_P001	Maize	nucleus	43.55	27.69
EES04307	Sorghum	nucleus	46.77	26.73
TraesCS1A01G097300.1	Wheat	cytosol	33.06	25.79
Os05t0155400-01	Rice	mitochondrion, nucleus, vacuole	35.48	22.8
HORVU1Hr1G022710.3	Barley	plastid	33.06	18.98
VIT_11s0016g02210.t01	Wine grape	nucleus, plastid	41.13	16.5
VIT_04s0008g01290.t01	Wine grape	plastid	38.71	15.69
VIT_04s0023g01840.t01	Wine grape	cytosol, plastid	23.39	12.08

Protein Annotations

EntrezGene:100256170	wikigene:100256170	MapMan:15.5.1.3	Gene3D:3.30.50.10	EMBL:AM454778	ProteinID:CAN74414
ProteinID:CAN74414.1	ProteinID:CCB61898	ProteinID:CCB61898.1	UniProt:F6I4R1	EMBL:FN596746	GO:GO:0000977
GO:GO:0001085	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355	GO:GO:0006366	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0045944	GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088	EntrezGene:LOC100256170	wikigene:LOC100256170
PFAM:PF00320	ScanProsite:PS00344	PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF242	SMART:SM00401
SUPFAM:SSF57716	UniParc:UPI000198492E	ArrayExpress:VIT_14s0060g01520	EnsemblPlantsGene:VIT_14s0060g01520	EnsemblPlants:VIT_14s0060g01520.t01	RefSeq:XP_002278369
RefSeq:XP_002278369.1	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:

Description

No Description!

Coordinates

chr14:+:1203210..1204422

Molecular Weight (calculated)

13859.0 Da

IEP (calculated)

10.409

GRAVY (calculated)

-0.702

Length

124 amino acids

Sequence
(BLAST)

001: MDLSKKESLS EEMNEIKKCC TDCKTTKTPL WRGGPAGPKS LCNACGIRYR KRRSSMVGVN KKKERMNSGS HDLSETLKQS LMALGNEVMM QRQRSSVKKQ
101: RRKLGEEEQA AVLLMALSCG SVFA

Best Arabidopsis Sequence Match ( AT5G49300.1 )
(BLAST)

001: MLDHSEKVLL VDSETMKTRA EDMIEQNNTS VNDKKKTCAD CGTSKTPLWR GGPVGPKSLC NACGIRNRKK RRGGTEDNKK LKKSSSGGGN RKFGESLKQS
101: LMDLGIRKRS TVEKQRQKLG EEEQAAVLLM ALSYGSVYA

Arabidopsis Description

GATA16Uncharacterized protein At5g49300 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVS9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.