Factsheet for VIT_05s0077g01450.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02314	Soybean	nucleus	62.75	68.57
CDY05639	Canola	nucleus	56.21	65.65
AT5G49300.1	Thale cress	cytosol	58.82	64.75
CDX85400	Canola	nucleus	52.29	62.99
Bra037421.1-P	Field mustard	nucleus	51.63	62.2
CDX86241	Canola	nucleus	51.63	62.2
CDY33918	Canola	nucleus	56.21	60.99
Bra020650.1-P	Field mustard	nucleus	55.56	60.71
KRH50773	Soybean	nucleus	61.44	59.49
AT3G06740.1	Thale cress	nucleus	55.56	57.05
VIT_14s0060g01520.t01	Wine grape	nucleus	45.75	56.45
Bra040288.1-P	Field mustard	nucleus	50.33	55.4
CDY34933	Canola	nucleus	50.33	55.0
PGSC0003DMT400011779	Potato	nucleus	57.52	52.38
Solyc12g099370.1.1	Tomato	nucleus	57.52	52.38
GSMUA_Achr3P00700_001	Banana	nucleus	41.83	51.61
Os01t0976800-01	Rice	nucleus	39.87	42.96
GSMUA_Achr8P33850_001	Banana	nucleus	41.83	42.95
GSMUA_Achr1P26550_001	Banana	nucleus	39.22	42.25
GSMUA_Achr1P14780_001	Banana	nucleus	34.64	42.06
PGSC0003DMT400060241	Potato	nucleus	53.59	41.62
Solyc05g054400.2.1	Tomato	nucleus	53.59	41.62
EER93149	Sorghum	nucleus	41.83	40.76
GSMUA_Achr7P03800_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	36.6	39.44
Zm00001d034751_P001	Maize	nucleus	41.18	38.65
HORVU5Hr1G116310.1	Barley	nucleus	40.52	38.27
TraesCS5D01G508800.1	Wheat	nucleus	39.22	37.04
TraesCS5B01G508800.1	Wheat	nucleus	39.22	35.93
TraesCS3A01G538400.1	Wheat	nucleus	39.22	35.71
Os01t0343300-01	Rice	nucleus	30.07	35.11
Zm00001d037605_P001	Maize	nucleus	32.68	34.97
KXG32453	Sorghum	nucleus	27.45	33.6
HORVU6Hr1G093630.3	Barley	mitochondrion	29.41	33.58
TraesCS3D01G544000.1	Wheat	nucleus	39.22	33.52
TraesCS3B01G603900.1	Wheat	nucleus	39.22	33.33
TraesCS4A01G364700.1	Wheat	nucleus	36.6	30.94
Zm00001d009193_P001	Maize	plastid	28.1	30.94
EES04307	Sorghum	nucleus	43.79	30.88
KXG21349	Sorghum	cytosol	31.37	30.77
Zm00001d011771_P001	Maize	nucleus	39.22	30.77
TraesCS1B01G126600.1	Wheat	cytosol	28.76	30.14
TraesCS1D01G106100.1	Wheat	cytosol	28.1	29.45
Zm00001d040775_P001	Maize	nucleus	26.8	27.89
TraesCS1A01G097300.1	Wheat	cytosol	28.1	27.04
Os05t0155400-01	Rice	mitochondrion, nucleus, vacuole	32.03	25.39
HORVU1Hr1G022710.3	Barley	plastid	28.1	19.91
VIT_11s0016g02210.t01	Wine grape	nucleus, plastid	36.6	18.12
VIT_04s0008g01290.t01	Wine grape	plastid	33.99	16.99
VIT_04s0023g01840.t01	Wine grape	cytosol, plastid	20.91	13.33

Protein Annotations

EntrezGene:100253375	wikigene:100253375	MapMan:15.5.1.3	Gene3D:3.30.50.10	ProteinID:CBI22924	ProteinID:CBI22924.3
UniProt:D7SY67	EMBL:FN595246	GO:GO:0000977	GO:GO:0001085	GO:GO:0001228	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139
GO:GO:0006355	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0045944	GO:GO:0046872	InterPro:IPR000679
InterPro:IPR013088	EntrezGene:LOC100253375	wikigene:LOC100253375	PFAM:PF00320	ScanProsite:PS00344	PFscan:PS50114
PANTHER:PTHR10071	PANTHER:PTHR10071:SF242	SMART:SM00401	SUPFAM:SSF57716	TIGR:TC63044	UniParc:UPI0001983254
ArrayExpress:VIT_05s0077g01450	EnsemblPlantsGene:VIT_05s0077g01450	EnsemblPlants:VIT_05s0077g01450.t01	unigene:Vvi.8350	RefSeq:XP_002275498	RefSeq:XP_002275498.1
RefSeq:XP_010649545.1	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:+:1163510..1164849

Molecular Weight (calculated)

16669.7 Da

IEP (calculated)

10.365

GRAVY (calculated)

-0.918

Length

153 amino acids

Sequence
(BLAST)

001: MVDLSEKGSE SEDMNNKNPD AVSSAESQVN EPKKTCADCG TTKTPLWRGG PAGPKSLCNA CGIRSRKKRR AFLGLNKGST DDRKAKRSSN HSHNNGGGNG
101: NNKLGDSLKR RLFALGREVL LQRSTVEKQR RKLGEEEQAA VLLMALSYGY VYA

Best Arabidopsis Sequence Match ( AT5G49300.1 )
(BLAST)

001: MLDHSEKVLL VDSETMKTRA EDMIEQNNTS VNDKKKTCAD CGTSKTPLWR GGPVGPKSLC NACGIRNRKK RRGGTEDNKK LKKSSSGGGN RKFGESLKQS
101: LMDLGIRKRS TVEKQRQKLG EEEQAAVLLM ALSYGSVYA

Arabidopsis Description

GATA16Uncharacterized protein At5g49300 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVS9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.