Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G106100.1 | Wheat | cytosol | 96.58 | 96.58 |
| TraesCS1A01G097300.1 | Wheat | cytosol | 93.15 | 85.53 |
| Zm00001d037605_P001 | Maize | nucleus | 68.49 | 69.93 |
| KXG21349 | Sorghum | cytosol | 67.81 | 63.46 |
| Os01t0343300-01 | Rice | nucleus | 56.16 | 62.6 |
| HORVU1Hr1G022710.3 | Barley | plastid | 91.1 | 61.57 |
| Os05t0155400-01 | Rice | mitochondrion, nucleus, vacuole | 75.34 | 56.99 |
| KRH68462 | Soybean | cytosol | 26.71 | 48.75 |
| Solyc09g075610.2.1 | Tomato | plastid | 28.08 | 46.07 |
| Bra009926.1-P | Field mustard | cytosol | 23.29 | 43.04 |
| KRG96744 | Soybean | cytosol, mitochondrion, nucleus | 22.6 | 39.76 |
| CDY25008 | Canola | nucleus | 26.71 | 39.0 |
| Bra036600.1-P | Field mustard | nucleus | 27.4 | 38.84 |
| CDX87024 | Canola | nucleus | 27.4 | 38.84 |
| PGSC0003DMT400081417 | Potato | nucleus | 28.08 | 38.68 |
| AT5G26930.1 | Thale cress | cytosol | 29.45 | 35.83 |
| GSMUA_Achr3P00700_001 | Banana | nucleus | 29.45 | 34.68 |
| CDY68751 | Canola | cytosol, mitochondrion | 23.29 | 33.66 |
| VIT_14s0060g01520.t01 | Wine grape | nucleus | 28.08 | 33.06 |
| CDX85400 | Canola | nucleus | 27.4 | 31.5 |
| CDX86241 | Canola | nucleus | 27.4 | 31.5 |
| Bra037421.1-P | Field mustard | nucleus | 27.4 | 31.5 |
| CDY05639 | Canola | nucleus | 27.4 | 30.53 |
| GSMUA_Achr8P33850_001 | Banana | nucleus | 30.82 | 30.2 |
| GSMUA_Achr1P26550_001 | Banana | nucleus | 28.08 | 28.87 |
| VIT_05s0077g01450.t01 | Wine grape | nucleus | 30.14 | 28.76 |
| Solyc12g099370.1.1 | Tomato | nucleus | 32.88 | 28.57 |
| GSMUA_Achr1P14780_001 | Banana | nucleus | 24.66 | 28.57 |
| PGSC0003DMT400011779 | Potato | nucleus | 32.88 | 28.57 |
| Solyc01g100220.2.1 | Tomato | nucleus | 28.77 | 28.19 |
| GSMUA_Achr7P03800_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 27.4 | 28.17 |
| Bra040288.1-P | Field mustard | nucleus | 26.71 | 28.06 |
| AT5G49300.1 | Thale cress | cytosol | 26.71 | 28.06 |
| CDX90545 | Canola | nucleus | 28.08 | 27.89 |
| CDY34933 | Canola | nucleus | 26.71 | 27.86 |
| Bra020650.1-P | Field mustard | nucleus | 26.71 | 27.86 |
| PGSC0003DMT400063771 | Potato | nucleus | 28.77 | 27.81 |
| CDY33918 | Canola | nucleus | 26.71 | 27.66 |
| TraesCS5B01G508800.1 | Wheat | nucleus | 31.51 | 27.54 |
| CDX80603 | Canola | nucleus | 27.4 | 27.21 |
| CDX82388 | Canola | nucleus | 31.51 | 26.44 |
| KRH02314 | Soybean | nucleus | 25.34 | 26.43 |
| CDY34429 | Canola | cytosol | 27.4 | 26.14 |
| CDX92103 | Canola | nucleus | 29.45 | 25.9 |
| Bra022184.1-P | Field mustard | nucleus | 29.45 | 25.9 |
| Bra012742.1-P | Field mustard | nucleus | 29.45 | 25.75 |
| CDX75893 | Canola | nucleus | 32.19 | 25.68 |
| CDX95897 | Canola | nucleus | 28.77 | 25.61 |
| AT3G06740.1 | Thale cress | nucleus | 26.03 | 25.5 |
| CDY34981 | Canola | nucleus | 28.77 | 24.56 |
| Solyc05g054400.2.1 | Tomato | nucleus | 32.88 | 24.37 |
| PGSC0003DMT400060241 | Potato | nucleus | 32.88 | 24.37 |
| CDY09717 | Canola | nucleus | 29.45 | 24.29 |
| Bra021209.1-P | Field mustard | nucleus | 28.08 | 23.98 |
| CDY52723 | Canola | nucleus | 29.45 | 23.89 |
| CDY32214 | Canola | nucleus | 28.77 | 23.46 |
| Bra033533.1-P | Field mustard | nucleus | 28.77 | 23.46 |
| KRH50773 | Soybean | nucleus | 25.34 | 23.42 |
| AT3G16870.1 | Thale cress | nucleus | 30.14 | 23.16 |
| TraesCS3B01G603900.1 | Wheat | nucleus | 28.08 | 22.78 |
| AT4G16141.1 | Thale cress | cytosol | 29.45 | 21.83 |
| TraesCS3B01G269000.1 | Wheat | cytosol, extracellular, nucleus | 21.92 | 14.29 |
| TraesCS1B01G448200.1 | Wheat | plastid | 21.23 | 14.29 |
| TraesCS6B01G214900.1 | Wheat | cytosol | 24.66 | 10.53 |
| TraesCS7B01G264800.1 | Wheat | nucleus | 26.03 | 10.53 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR000679 | InterPro:IPR013088 | PFAM:PF00320 |
| ScanProsite:PS00344 | PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF240 | SMART:SM00401 | SUPFAM:SSF57716 |
| EnsemblPlantsGene:TraesCS1B01G126600 | EnsemblPlants:TraesCS1B01G126600.1 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | TIGR:cd00202 | SEG:seg |
Description
No Description!
Coordinates
chr1B:+:155404849..155406184
Molecular Weight (calculated)
16078.0 Da
IEP (calculated)
9.844
GRAVY (calculated)
-0.945
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSHHKVIG VAPAAAEGGR MCCVECRTTT TPMWRSGPTG PRTLCNACGI RYRKKRRQEL GLDNKPQNQQ LNQQQQQQQQ QQQQQQQQED HGEATSAVKD
101: SSSSTNNKSN SLQVVKKKRT VSMGVEEAAF LLMALSSSST PPLLHG
101: SSSSTNNKSN SLQVVKKKRT VSMGVEEAAF LLMALSSSST PPLLHG
001: MDPRKLLSCS SSYVSVRMKE EKGTIRCCSE CKTTKTPMWR GGPTGPKSLC NACGIRHRKQ RRSELLGIHI IRSHKSLASK KINLLSSSHG GVAVKKRRSL
101: KEEEQAALCL LLLSCSSVLA
101: KEEEQAALCL LLLSCSSVLA
Arabidopsis Description
GATA23GATA transcription factor 23 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC59]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.