Factsheet for Bra021209.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34981	Canola	nucleus	97.08	97.08
CDY52723	Canola	nucleus	94.15	89.44
Bra022184.1-P	Field mustard	nucleus	78.36	80.72
AT3G16870.1	Thale cress	nucleus	77.78	70.0
Bra012742.1-P	Field mustard	nucleus	65.5	67.07
Bra033533.1-P	Field mustard	nucleus	63.16	60.34
Bra001644.1-P	Field mustard	nucleus	50.88	59.59
Bra037421.1-P	Field mustard	nucleus	38.01	51.18
Bra020650.1-P	Field mustard	nucleus	39.18	47.86
Bra036600.1-P	Field mustard	nucleus	28.07	46.6
GSMUA_Achr3P00700_001	Banana	nucleus	31.58	43.55
Bra009926.1-P	Field mustard	cytosol	19.88	43.04
Bra040288.1-P	Field mustard	nucleus	34.5	42.45
PGSC0003DMT400011779	Potato	nucleus	40.94	41.67
Solyc12g099370.1.1	Tomato	nucleus	40.94	41.67
Solyc05g054400.2.1	Tomato	nucleus	42.69	37.06
GSMUA_Achr8P33850_001	Banana	nucleus	32.16	36.91
Os01t0976800-01	Rice	nucleus	30.41	36.62
GSMUA_Achr1P26550_001	Banana	nucleus	30.41	36.62
PGSC0003DMT400060241	Potato	nucleus	41.52	36.04
GSMUA_Achr7P03800_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	29.24	35.21
EER93149	Sorghum	nucleus	31.58	34.39
GSMUA_Achr1P14780_001	Banana	nucleus	25.15	34.13
KXG32453	Sorghum	nucleus	24.56	33.6
Zm00001d037605_P001	Maize	nucleus	28.07	33.57
TraesCS3A01G538400.1	Wheat	nucleus	32.75	33.33
Zm00001d034751_P001	Maize	nucleus	31.58	33.13
Os01t0343300-01	Rice	nucleus	25.15	32.82
TraesCS5D01G508800.1	Wheat	nucleus	30.99	32.72
HORVU5Hr1G116310.1	Barley	nucleus	30.41	32.1
TraesCS3D01G544000.1	Wheat	nucleus	33.33	31.84
TraesCS3B01G603900.1	Wheat	nucleus	33.33	31.67
TraesCS5B01G508800.1	Wheat	nucleus	30.41	31.14
Zm00001d009193_P001	Maize	plastid	25.15	30.94
KXG21349	Sorghum	cytosol	26.9	29.49
TraesCS1D01G106100.1	Wheat	cytosol	24.56	28.77
Zm00001d040775_P001	Maize	nucleus	24.56	28.57
Zm00001d011771_P001	Maize	nucleus	32.16	28.21
TraesCS1B01G126600.1	Wheat	cytosol	23.98	28.08
HORVU6Hr1G093630.3	Barley	mitochondrion	21.64	27.61
EES04307	Sorghum	nucleus	34.5	27.19
TraesCS4A01G364700.1	Wheat	nucleus	28.07	26.52
TraesCS1A01G097300.1	Wheat	cytosol	24.56	26.42
Os05t0155400-01	Rice	mitochondrion, nucleus, vacuole	27.49	24.35
Bra039614.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	15.79	19.71
HORVU1Hr1G022710.3	Barley	plastid	24.56	19.44
Bra035633.1-P	Field mustard	nucleus	26.32	14.95
Bra037221.1-P	Field mustard	nucleus	19.88	14.35
Bra026461.1-P	Field mustard	nucleus	29.82	14.17
Bra017766.1-P	Field mustard	nucleus	15.2	13.76
Bra011695.1-P	Field mustard	nucleus	17.54	13.45
Bra010563.1-P	Field mustard	cytosol	16.37	13.15
Bra012080.1-P	Field mustard	nucleus	18.13	13.14
Bra006851.1-P	Field mustard	nucleus, plastid	28.07	12.5
Bra002788.1-P	Field mustard	nucleus	28.07	12.4
Bra019118.1-P	Field mustard	nucleus	28.07	12.37
Bra036854.1-P	Field mustard	nucleus	18.71	11.07
Bra012883.1-P	Field mustard	nucleus	17.54	10.79

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EnsemblPlantsGene:Bra021209	EnsemblPlants:Bra021209.1	EnsemblPlants:Bra021209.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088	UniProt:M4DXG3	PFAM:PF00320	ScanProsite:PS00344
PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF242	SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI00025439D7
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

AT3G16870 (E=6e-037) | zinc finger (GATA type) family protein

Coordinates

chrA01:+:23347298..23347903

Molecular Weight (calculated)

18452.9 Da

IEP (calculated)

9.167

GRAVY (calculated)

-0.696

Length

171 amino acids

Sequence
(BLAST)

001: MSEGSEETKT KIDSAGELSD VDNENCSSSG SGGGETKKTC VDCGTFKTPL WRGGLAGPKS LCNACGIKSR KKRQAALGIK PEKKIRKSNS CESDLSLEDD
101: RNVNNKIKKA DDHTSTSSSC SKRVSKFLDL GLEVPVMKRS SVEKKRLWKK LGEEERAAVL LMALSCGSVY A

Best Arabidopsis Sequence Match ( AT3G16870.1 )
(BLAST)

001: MSEGSEDTKT KLDSAGELSD VDNENCSSSG SGGGSSSGDT KRTCVDCGTI RTPLWRGGPA GPKSLCNACG IKSRKKRQAA LGMRSEEKKK NRKSNCNNDL
101: NLDHRNAKKY KINIVDDGKI DIDDDPKICN NKRSSSSSSN KGVSKFLDLG FKVPVMKRSA VEKKRLWRKL GEEERAAVLL MALSCSSVYA

Arabidopsis Description

GATA17Uncharacterized protein At3g16870 [Source:UniProtKB/TrEMBL;Acc:Q0WPA1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.