Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER93149 | Sorghum | nucleus | 87.73 | 91.08 |
| HORVU5Hr1G116310.1 | Barley | nucleus | 68.71 | 69.14 |
| TraesCS5D01G508800.1 | Wheat | nucleus | 68.1 | 68.52 |
| TraesCS5B01G508800.1 | Wheat | nucleus | 68.71 | 67.07 |
| HORVU6Hr1G093630.3 | Barley | mitochondrion | 48.47 | 58.96 |
| TraesCS4A01G364700.1 | Wheat | nucleus | 65.03 | 58.56 |
| KRH68462 | Soybean | cytosol | 28.22 | 57.5 |
| Solyc09g075610.2.1 | Tomato | plastid | 30.06 | 55.06 |
| TraesCS3A01G538400.1 | Wheat | nucleus | 54.6 | 52.98 |
| TraesCS3D01G544000.1 | Wheat | nucleus | 55.21 | 50.28 |
| PGSC0003DMT400081417 | Potato | nucleus | 32.52 | 50.0 |
| VIT_14s0060g01520.t01 | Wine grape | nucleus | 37.42 | 49.19 |
| TraesCS3B01G603900.1 | Wheat | nucleus | 53.37 | 48.33 |
| GSMUA_Achr3P00700_001 | Banana | nucleus | 36.2 | 47.58 |
| CDX85400 | Canola | nucleus | 36.81 | 47.24 |
| KRG96744 | Soybean | cytosol, mitochondrion, nucleus | 23.31 | 45.78 |
| Bra037421.1-P | Field mustard | nucleus | 34.97 | 44.88 |
| CDX86241 | Canola | nucleus | 34.97 | 44.88 |
| CDX87024 | Canola | nucleus | 27.61 | 43.69 |
| GSMUA_Achr8P33850_001 | Banana | nucleus | 38.65 | 42.28 |
| GSMUA_Achr1P26550_001 | Banana | nucleus | 36.81 | 42.25 |
| CDY25008 | Canola | nucleus | 25.77 | 42.0 |
| Bra009926.1-P | Field mustard | cytosol | 20.25 | 41.77 |
| CDY05639 | Canola | nucleus | 33.13 | 41.22 |
| VIT_05s0077g01450.t01 | Wine grape | nucleus | 38.65 | 41.18 |
| Bra036600.1-P | Field mustard | nucleus | 25.77 | 40.78 |
| Bra020650.1-P | Field mustard | nucleus | 34.97 | 40.71 |
| CDY33918 | Canola | nucleus | 34.97 | 40.43 |
| AT3G06740.1 | Thale cress | nucleus | 36.81 | 40.27 |
| AT5G26930.1 | Thale cress | cytosol | 29.45 | 40.0 |
| Zm00001d011771_P001 | Maize | nucleus | 47.24 | 39.49 |
| GSMUA_Achr7P03800_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 34.36 | 39.44 |
| KRH02314 | Soybean | nucleus | 33.74 | 39.29 |
| PGSC0003DMT400063771 | Potato | nucleus | 36.2 | 39.07 |
| Solyc01g100220.2.1 | Tomato | nucleus | 35.58 | 38.93 |
| AT5G49300.1 | Thale cress | cytosol | 32.52 | 38.13 |
| Bra040288.1-P | Field mustard | nucleus | 32.52 | 38.13 |
| Solyc12g099370.1.1 | Tomato | nucleus | 39.26 | 38.1 |
| PGSC0003DMT400011779 | Potato | nucleus | 39.26 | 38.1 |
| CDY34933 | Canola | nucleus | 32.52 | 37.86 |
| Zm00001d037605_P001 | Maize | nucleus | 32.52 | 37.06 |
| GSMUA_Achr1P14780_001 | Banana | nucleus | 28.22 | 36.51 |
| Zm00001d009193_P001 | Maize | plastid | 30.67 | 35.97 |
| CDY34429 | Canola | cytosol | 33.13 | 35.29 |
| KRH50773 | Soybean | nucleus | 33.74 | 34.81 |
| CDX90545 | Canola | nucleus | 30.67 | 34.01 |
| CDY68751 | Canola | cytosol, mitochondrion | 20.25 | 32.67 |
| Zm00001d040775_P001 | Maize | nucleus | 29.45 | 32.65 |
| Bra012742.1-P | Field mustard | nucleus | 33.13 | 32.34 |
| CDX95897 | Canola | nucleus | 32.52 | 32.32 |
| CDX92103 | Canola | nucleus | 32.52 | 31.93 |
| Bra033533.1-P | Field mustard | nucleus | 34.97 | 31.84 |
| CDY32214 | Canola | nucleus | 34.97 | 31.84 |
| CDY09717 | Canola | nucleus | 34.36 | 31.64 |
| CDY34981 | Canola | nucleus | 33.13 | 31.58 |
| Bra021209.1-P | Field mustard | nucleus | 33.13 | 31.58 |
| Bra022184.1-P | Field mustard | nucleus | 31.9 | 31.33 |
| PGSC0003DMT400060241 | Potato | nucleus | 37.42 | 30.96 |
| Solyc05g054400.2.1 | Tomato | nucleus | 37.42 | 30.96 |
| CDX82388 | Canola | nucleus | 32.52 | 30.46 |
| CDX80603 | Canola | nucleus | 26.99 | 29.93 |
| CDY52723 | Canola | nucleus | 32.52 | 29.44 |
| AT4G16141.1 | Thale cress | cytosol | 34.97 | 28.93 |
| AT3G16870.1 | Thale cress | nucleus | 33.13 | 28.42 |
| CDX75893 | Canola | nucleus | 31.9 | 28.42 |
| Zm00001d009604_P001 | Maize | cytosol, nucleus, plastid | 17.79 | 14.29 |
| Zm00001d043969_P001 | Maize | endoplasmic reticulum | 19.63 | 13.73 |
| Zm00001d046354_P001 | Maize | nucleus | 30.06 | 13.24 |
| Zm00001d009668_P001 | Maize | mitochondrion, nucleus | 21.47 | 12.96 |
| Zm00001d016361_P001 | Maize | nucleus | 28.22 | 12.43 |
| Zm00001d039113_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 20.86 | 11.97 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | UniProt:A0A060D834 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046872 |
| InterPro:IPR000679 | InterPro:IPR013088 | EMBL:KJ728013 | ProteinID:ONM11144.1 | PFAM:PF00320 | ScanProsite:PS00344 |
| PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF279 | SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI0001E23EEE |
| EnsemblPlantsGene:Zm00001d034751 | EnsemblPlants:Zm00001d034751_P001 | EnsemblPlants:Zm00001d034751_T001 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg |
Description
C2C2-GATA-transcription factor 18GATA transcription factor 16
Coordinates
chr1:+:301301000..301302433
Molecular Weight (calculated)
17990.5 Da
IEP (calculated)
10.626
GRAVY (calculated)
-0.887
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSVEKQGS VALDPDERAP ASGETKACTE CHTTKTPLWR GGPCGPMSLC NACGIRYRKK RREAMGLESS SKAATAGGSE HQQQQRKKKA TAAAAAASSK
101: RERERERERN KEADEVTVEL RAVGFGKEVV LKQRRRMRRR RRLGEEERAA ILLMALSSGV VYA
101: RERERERERN KEADEVTVEL RAVGFGKEVV LKQRRRMRRR RRLGEEERAA ILLMALSSGV VYA
001: MLDHSEKVLL VDSETMKTRA EDMIEQNNTS VNDKKKTCAD CGTSKTPLWR GGPVGPKSLC NACGIRNRKK RRGGTEDNKK LKKSSSGGGN RKFGESLKQS
101: LMDLGIRKRS TVEKQRQKLG EEEQAAVLLM ALSYGSVYA
101: LMDLGIRKRS TVEKQRQKLG EEEQAAVLLM ALSYGSVYA
Arabidopsis Description
GATA16Uncharacterized protein At5g49300 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVS9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.