Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86241 | Canola | nucleus | 96.06 | 96.06 |
| CDY05639 | Canola | nucleus | 77.95 | 75.57 |
| CDY33918 | Canola | nucleus | 80.31 | 72.34 |
| CDY34933 | Canola | nucleus | 59.84 | 54.29 |
| VIT_05s0077g01450.t01 | Wine grape | nucleus | 62.99 | 52.29 |
| GSMUA_Achr3P00700_001 | Banana | nucleus | 48.03 | 49.19 |
| KRH02314 | Soybean | nucleus | 51.97 | 47.14 |
| CDY25008 | Canola | nucleus | 36.22 | 46.0 |
| CDX87024 | Canola | nucleus | 37.01 | 45.63 |
| Solyc12g099370.1.1 | Tomato | nucleus | 55.12 | 41.67 |
| KRH50773 | Soybean | nucleus | 51.18 | 41.14 |
| PGSC0003DMT400011779 | Potato | nucleus | 54.33 | 41.07 |
| CDX92103 | Canola | nucleus | 53.54 | 40.96 |
| CDX90545 | Canola | nucleus | 47.24 | 40.82 |
| CDY34429 | Canola | cytosol | 48.82 | 40.52 |
| GSMUA_Achr1P14780_001 | Banana | nucleus | 40.16 | 40.48 |
| GSMUA_Achr8P33850_001 | Banana | nucleus | 47.24 | 40.27 |
| CDX95897 | Canola | nucleus | 51.18 | 39.63 |
| GSMUA_Achr1P26550_001 | Banana | nucleus | 44.09 | 39.44 |
| CDY34981 | Canola | nucleus | 52.76 | 39.18 |
| EER93149 | Sorghum | nucleus | 48.03 | 38.85 |
| Os01t0976800-01 | Rice | nucleus | 42.52 | 38.03 |
| CDY52723 | Canola | nucleus | 52.76 | 37.22 |
| Zm00001d034751_P001 | Maize | nucleus | 47.24 | 36.81 |
| CDX82388 | Canola | nucleus | 50.39 | 36.78 |
| CDY09717 | Canola | nucleus | 51.18 | 36.72 |
| GSMUA_Achr7P03800_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 40.94 | 36.62 |
| CDX75893 | Canola | nucleus | 51.18 | 35.52 |
| CDY32214 | Canola | nucleus | 49.61 | 35.2 |
| HORVU5Hr1G116310.1 | Barley | nucleus | 44.88 | 35.19 |
| TraesCS5D01G508800.1 | Wheat | nucleus | 44.09 | 34.57 |
| PGSC0003DMT400060241 | Potato | nucleus | 52.76 | 34.01 |
| Solyc05g054400.2.1 | Tomato | nucleus | 52.76 | 34.01 |
| CDY68751 | Canola | cytosol, mitochondrion | 26.77 | 33.66 |
| TraesCS5B01G508800.1 | Wheat | nucleus | 44.09 | 33.53 |
| Zm00001d037605_P001 | Maize | nucleus | 37.01 | 32.87 |
| TraesCS3A01G538400.1 | Wheat | nucleus | 43.31 | 32.74 |
| CDX80603 | Canola | nucleus | 37.01 | 31.97 |
| KXG32453 | Sorghum | nucleus | 30.71 | 31.2 |
| HORVU6Hr1G093630.3 | Barley | mitochondrion | 32.28 | 30.6 |
| TraesCS3D01G544000.1 | Wheat | nucleus | 42.52 | 30.17 |
| Os01t0343300-01 | Rice | nucleus | 30.71 | 29.77 |
| TraesCS3B01G603900.1 | Wheat | nucleus | 41.73 | 29.44 |
| KXG21349 | Sorghum | cytosol | 35.43 | 28.85 |
| Zm00001d009193_P001 | Maize | plastid | 31.5 | 28.78 |
| TraesCS4A01G364700.1 | Wheat | nucleus | 40.94 | 28.73 |
| Zm00001d011771_P001 | Maize | nucleus | 42.52 | 27.69 |
| TraesCS1B01G126600.1 | Wheat | cytosol | 31.5 | 27.4 |
| TraesCS1D01G106100.1 | Wheat | cytosol | 31.5 | 27.4 |
| EES04307 | Sorghum | nucleus | 45.67 | 26.73 |
| Zm00001d040775_P001 | Maize | nucleus | 29.92 | 25.85 |
| TraesCS1A01G097300.1 | Wheat | cytosol | 31.5 | 25.16 |
| Os05t0155400-01 | Rice | mitochondrion, nucleus, vacuole | 36.22 | 23.83 |
| HORVU1Hr1G022710.3 | Barley | plastid | 31.5 | 18.52 |
| CDY53079 | Canola | cytosol | 25.2 | 15.46 |
| CDY60289 | Canola | nucleus | 24.41 | 15.35 |
| CDY13040 | Canola | cytosol | 23.62 | 15.08 |
| CDY72649 | Canola | nucleus | 23.62 | 15.0 |
| CDY51221 | Canola | nucleus | 23.62 | 14.93 |
| CDY68627 | Canola | nucleus | 25.98 | 14.86 |
| CDX69237 | Canola | nucleus | 25.98 | 14.8 |
| CDY70754 | Canola | nucleus | 25.2 | 14.35 |
| CDY69687 | Canola | nucleus | 21.26 | 14.29 |
| CDX72587 | Canola | cytosol | 25.2 | 14.1 |
| CDY24779 | Canola | nucleus | 23.62 | 14.08 |
| CDY45238 | Canola | nucleus | 25.2 | 13.56 |
| CDX88593 | Canola | nucleus | 37.8 | 13.52 |
| CDY42753 | Canola | nucleus | 37.8 | 12.97 |
| CDY42752 | Canola | nucleus | 37.8 | 12.97 |
| CDX77958 | Canola | nucleus | 26.77 | 12.78 |
| CDX94365 | Canola | nucleus | 36.22 | 12.78 |
| CDY30768 | Canola | nucleus | 22.83 | 12.72 |
| CDY67546 | Canola | nucleus | 37.01 | 12.5 |
| CDX89358 | Canola | nucleus | 35.43 | 12.5 |
| CDY65439 | Canola | nucleus | 37.01 | 12.24 |
| CDY28986 | Canola | cytosol | 25.98 | 12.04 |
| CDY32755 | Canola | nucleus | 36.22 | 11.89 |
| CDX90680 | Canola | nucleus | 25.98 | 11.87 |
| CDY67979 | Canola | nucleus | 36.22 | 11.73 |
| CDX73777 | Canola | nucleus | 26.77 | 11.72 |
| CDY20709 | Canola | nucleus | 36.22 | 11.68 |
| CDY32891 | Canola | nucleus | 35.43 | 11.6 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:A0A078D873 | EnsemblPlants:CDX85400 | ProteinID:CDX85400 | ProteinID:CDX85400.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00143081001 | InterPro:IPR000679 | InterPro:IPR013088 | PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 |
| PANTHER:PTHR10071 | PANTHER:PTHR10071:SF242 | SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI0004EC1739 | InterPro:Znf_GATA |
| InterPro:Znf_NHR/GATA | SEG:seg | : | : | : | : |
Description
BnaC07g27110D
Coordinates
chrLK031841:-:1596941..1597766
Molecular Weight (calculated)
13999.9 Da
IEP (calculated)
10.768
GRAVY (calculated)
-1.057
Length
127 amino acids
Sequence
(BLAST)
(BLAST)
001: MLDHSEKVSK PRAEDMIEQN KTRSSNEKKT CAHCGTSKTP LWRGGPAGPK SLCNACGIRN RKKRRGVENK KQQSKKSSSG GGGDLKQRMV DFGMGKRSTV
101: EKQRRKLGEE EQAAVLLMAL SYGSVYA
101: EKQRRKLGEE EQAAVLLMAL SYGSVYA
001: MLDHSEKVLL VDSETMKTRA EDMIEQNNTS VNDKKKTCAD CGTSKTPLWR GGPVGPKSLC NACGIRNRKK RRGGTEDNKK LKKSSSGGGN RKFGESLKQS
101: LMDLGIRKRS TVEKQRQKLG EEEQAAVLLM ALSYGSVYA
101: LMDLGIRKRS TVEKQRQKLG EEEQAAVLLM ALSYGSVYA
Arabidopsis Description
GATA16Uncharacterized protein At5g49300 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVS9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.