Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY28683 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G56860.1 | CDY28683 | AT3G01320.1 | 19962994 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002788.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY32891 | Canola | nucleus | 94.57 | 94.33 |
| CDY65439 | Canola | nucleus | 81.14 | 81.77 |
| CDX88593 | Canola | nucleus | 73.39 | 80.0 |
| CDY67979 | Canola | nucleus | 80.88 | 79.85 |
| CDY20709 | Canola | nucleus | 81.14 | 79.7 |
| AT5G56860.1 | Thale cress | nucleus | 80.88 | 78.64 |
| CDY42752 | Canola | nucleus | 48.84 | 51.08 |
| CDY42753 | Canola | nucleus | 48.58 | 50.81 |
| CDX94365 | Canola | nucleus | 47.03 | 50.56 |
| CDY67546 | Canola | nucleus | 48.84 | 50.27 |
| CDX89358 | Canola | nucleus | 45.99 | 49.44 |
| CDY25008 | Canola | nucleus | 10.59 | 41.0 |
| KRH19153 | Soybean | nucleus | 32.04 | 39.49 |
| CDX87024 | Canola | nucleus | 10.34 | 38.84 |
| KRH02716 | Soybean | nucleus | 31.78 | 38.2 |
| GSMUA_Achr8P24880_001 | Banana | nucleus | 20.93 | 37.16 |
| CDY05639 | Canola | nucleus | 12.4 | 36.64 |
| CDX85400 | Canola | nucleus | 11.89 | 36.22 |
| CDX86241 | Canola | nucleus | 11.89 | 36.22 |
| KRH12382 | Soybean | nucleus | 28.17 | 34.6 |
| CDY68751 | Canola | cytosol, mitochondrion | 8.79 | 33.66 |
| CDY34933 | Canola | nucleus | 12.14 | 33.57 |
| CDY33918 | Canola | nucleus | 12.14 | 33.33 |
| KRH37384 | Soybean | nucleus | 27.39 | 31.45 |
| CDX92103 | Canola | nucleus | 12.66 | 29.52 |
| TraesCS7A01G363100.1 | Wheat | nucleus | 27.13 | 29.49 |
| CDY34429 | Canola | cytosol | 11.63 | 29.41 |
| CDX90545 | Canola | nucleus | 11.11 | 29.25 |
| TraesCS7D01G359900.1 | Wheat | nucleus | 26.61 | 28.69 |
| HORVU7Hr1G086810.1 | Barley | nucleus | 26.61 | 28.61 |
| TraesCS7B01G264800.1 | Wheat | nucleus | 26.36 | 28.25 |
| CDY34981 | Canola | nucleus | 12.4 | 28.07 |
| Zm00001d046354_P001 | Maize | nucleus | 26.61 | 27.84 |
| TraesCS6A01G185900.1 | Wheat | cytosol | 24.29 | 27.49 |
| CDY52723 | Canola | nucleus | 12.66 | 27.22 |
| EER88552 | Sorghum | nucleus | 27.13 | 27.2 |
| Os02t0220400-01 | Rice | nucleus | 24.81 | 27.2 |
| TraesCS6D01G173000.1 | Wheat | cytosol | 24.03 | 27.19 |
| CDX95897 | Canola | nucleus | 11.37 | 26.83 |
| CDY32214 | Canola | nucleus | 12.4 | 26.82 |
| Zm00001d016361_P001 | Maize | nucleus | 25.58 | 26.76 |
| HORVU6Hr1G039720.2 | Barley | cytosol | 23.77 | 26.74 |
| TraesCS6B01G214900.1 | Wheat | cytosol | 23.51 | 26.61 |
| CDX80603 | Canola | nucleus | 10.08 | 26.53 |
| CDX82388 | Canola | nucleus | 11.63 | 25.86 |
| Os06t0571800-02 | Rice | nucleus | 23.0 | 25.65 |
| CDY09717 | Canola | nucleus | 11.63 | 25.42 |
| CDX75893 | Canola | nucleus | 11.89 | 25.14 |
| KXG29816 | Sorghum | nucleus | 24.81 | 24.81 |
| CDY60289 | Canola | nucleus | 11.37 | 21.78 |
| CDY51221 | Canola | nucleus | 11.11 | 21.39 |
| CDY13040 | Canola | cytosol | 10.85 | 21.11 |
| CDY53079 | Canola | cytosol | 11.11 | 20.77 |
| CDY69687 | Canola | nucleus | 10.08 | 20.63 |
| CDY72649 | Canola | nucleus | 10.59 | 20.5 |
| CDY68627 | Canola | nucleus | 11.63 | 20.27 |
| CDX69237 | Canola | nucleus | 11.63 | 20.18 |
| CDY70754 | Canola | nucleus | 11.37 | 19.73 |
| CDY24779 | Canola | nucleus | 10.85 | 19.72 |
| CDX72587 | Canola | cytosol | 11.37 | 19.38 |
| CDY28986 | Canola | cytosol | 13.18 | 18.61 |
| CDX77958 | Canola | nucleus | 12.66 | 18.42 |
| CDX90680 | Canola | nucleus | 13.18 | 18.35 |
| CDX73777 | Canola | nucleus | 12.92 | 17.24 |
| CDY45238 | Canola | nucleus | 10.08 | 16.53 |
| CDY30768 | Canola | nucleus | 9.3 | 15.79 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:A0A078H2A8 | UniProt:A0A078H2A8 | EnsemblPlants:CDY32755 | ProteinID:CDY32755 |
| ProteinID:CDY32755.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00052811001 | InterPro:IPR000679 | InterPro:IPR013088 |
| PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF191 | SMART:SM00401 |
| SUPFAM:SSF57716 | UniParc:UPI0002544BF0 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg | : |
Description
BnaA10g10940DBnaA10g10940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H2A8]
Coordinates
chrLK032299:+:49613..51740
Molecular Weight (calculated)
43431.7 Da
IEP (calculated)
9.358
GRAVY (calculated)
-0.950
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSNFHYSID LNEDQDHHEE PFFYPLGSSS SLLHNYQVPS NSSSSSSSIS SLSSYLPFLI NSQDDQHVAC NNTYQYEHFH LSQPLKANMF NGGSSSSSYD
101: RMVPKKETRL KLTIRKKDHH DDQTDFLHHP TKPNSDSDKW MMSPKMRLIK KTITNNKQPT DQANNNNNRN HKEDHYPFNQ KTSFEKDHDE DLKKVTTTAV
201: TTENRYNTIK DNGYGNNNGV IRVCSDCNTT KTPLWRSGPR GPKSLCNACG IRQRKARKAA MAAAVAAGDQ EVVAAQLQQI PAKKKLQSKK KRSNGGDKFN
301: LSPPVMSKTK KCKIKEQEQE DTTTVAGDSE ISKSTTSSDS SISSNKLCFN DLTIMLRKSS AYQQVFPQDE KEAAILLMAL SHGMVHG
101: RMVPKKETRL KLTIRKKDHH DDQTDFLHHP TKPNSDSDKW MMSPKMRLIK KTITNNKQPT DQANNNNNRN HKEDHYPFNQ KTSFEKDHDE DLKKVTTTAV
201: TTENRYNTIK DNGYGNNNGV IRVCSDCNTT KTPLWRSGPR GPKSLCNACG IRQRKARKAA MAAAVAAGDQ EVVAAQLQQI PAKKKLQSKK KRSNGGDKFN
301: LSPPVMSKTK KCKIKEQEQE DTTTVAGDSE ISKSTTSSDS SISSNKLCFN DLTIMLRKSS AYQQVFPQDE KEAAILLMAL SHGMVHG
001: MDSNFHYSID LNEDQNHHEQ PFFYPLGSSS SLHHHHHHHH HQVPSNSSSS SSSISSLSSY LPFLINSQED QHVAYNNTYH ADHLHLSQPL KAKMFVANGG
101: SSACDHMVPK KETRLKLTIR KKDHEDQPHP LHQNPTKPDS DSDKWLMSPK MRLIKKTITN NKQLIDQTNN NNHKESDHYP LNHKTNFDED HHEDLNFKNV
201: LTRKTTAATT ENRYNTINEN GYSNNNGVIR VCSDCNTTKT PLWRSGPRGP KSLCNACGIR QRKARRAAMA AAAAAGDQEV AVAPRVQQLP LKKKLQNKKK
301: RSNGGEKYNH SPPMVAKAKK CKIKEEEEKE MEAETVAGDS EISKSTTSSN SSISSNKFCF DDLTIMLSKS SAYQQVFPQD EKEAAVLLMA LSYGMVHG
101: SSACDHMVPK KETRLKLTIR KKDHEDQPHP LHQNPTKPDS DSDKWLMSPK MRLIKKTITN NKQLIDQTNN NNHKESDHYP LNHKTNFDED HHEDLNFKNV
201: LTRKTTAATT ENRYNTINEN GYSNNNGVIR VCSDCNTTKT PLWRSGPRGP KSLCNACGIR QRKARRAAMA AAAAAGDQEV AVAPRVQQLP LKKKLQNKKK
301: RSNGGEKYNH SPPMVAKAKK CKIKEEEEKE MEAETVAGDS EISKSTTSSN SSISSNKFCF DDLTIMLSKS SAYQQVFPQD EKEAAVLLMA LSYGMVHG
Arabidopsis Description
GATA21GATA transcription factor 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5HZ36]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.