CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93437
KRH18559
KRH18561

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56860.1	KRG93437	AT3G01320.1	19962994
AT5G56860.1	KRH18559	AT3G01320.1	19962994
AT5G56860.1	KRH18561	AT3G01320.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02716	Soybean	nucleus	89.81	87.58
KRH12382	Soybean	nucleus	58.28	58.1
KRH37384	Soybean	nucleus	56.69	52.82
KRH68462	Soybean	cytosol	13.06	51.25
KRG96744	Soybean	cytosol, mitochondrion, nucleus	10.51	39.76
GSMUA_Achr8P24880_001	Banana	nucleus	27.07	38.99
KRH02314	Soybean	nucleus	16.56	37.14
Bra035633.1-P	Field mustard	nucleus	32.8	34.22
CDX88593	Canola	nucleus	37.58	33.24
KRH50773	Soybean	nucleus	16.56	32.91
Bra002788.1-P	Field mustard	nucleus	39.49	32.04
CDY32755	Canola	nucleus	39.49	32.04
KRH15535	Soybean	nucleus	31.21	32.03
AT5G56860.1	Thale cress	nucleus	40.45	31.91
KRH61505	Soybean	nucleus	29.62	31.85
CDY20709	Canola	nucleus	39.81	31.73
CDY67979	Canola	nucleus	39.49	31.63
CDX94365	Canola	nucleus	35.67	31.11
AT4G26150.1	Thale cress	cytosol	34.71	30.97
Bra026461.1-P	Field mustard	nucleus	35.35	30.83
Bra006851.1-P	Field mustard	nucleus, plastid	37.58	30.73
CDY32891	Canola	nucleus	37.9	30.67
CDX89358	Canola	nucleus	35.03	30.56
CDY65439	Canola	nucleus	37.26	30.47
KRH05458	Soybean	nucleus	29.62	30.39
CDY42752	Canola	nucleus	35.67	30.27
CDY42753	Canola	nucleus	35.67	30.27
CDY67546	Canola	nucleus	35.99	30.05
Bra019118.1-P	Field mustard	nucleus	35.67	28.87
TraesCS6D01G173000.1	Wheat	cytosol	29.62	27.19
TraesCS6A01G185900.1	Wheat	cytosol	29.62	27.19
Zm00001d016361_P001	Maize	nucleus	31.85	27.03
KRH30068	Soybean	plastid	13.38	26.92
HORVU6Hr1G039720.2	Barley	cytosol	29.3	26.74
Os02t0220400-01	Rice	nucleus	29.62	26.35
TraesCS6B01G214900.1	Wheat	cytosol	28.34	26.02
KXG29816	Sorghum	nucleus	31.85	25.84
KRH69915	Soybean	nucleus	20.7	25.79
Zm00001d046354_P001	Maize	nucleus	30.25	25.68
TraesCS7D01G359900.1	Wheat	nucleus	29.3	25.63
TraesCS7A01G363100.1	Wheat	nucleus	28.98	25.56
KRH08269	Soybean	nucleus	20.38	25.5
HORVU7Hr1G086810.1	Barley	nucleus	28.98	25.28
TraesCS7B01G264800.1	Wheat	nucleus	28.98	25.21
KRH28681	Soybean	nucleus	19.43	24.9
EER88552	Sorghum	nucleus	30.25	24.61
Os06t0571800-02	Rice	nucleus	26.43	23.92
KRH43324	Soybean	nucleus	7.96	18.38

Protein Annotations

EntrezGene:100810090	MapMan:15.5.1.3	Gene3D:3.30.50.10	EMBL:ACUP02008170	EnsemblPlantsGene:GLYMA_13G103900	GO:GO:0000977
GO:GO:0001085	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355	GO:GO:0006366	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0045944	GO:GO:0046872	UniProt:I1LVJ1	InterPro:IPR000679	InterPro:IPR013088	EnsemblPlants:KRH19153
ProteinID:KRH19153	ProteinID:KRH19153.1	PFAM:PF00320	ScanProsite:PS00344	PFscan:PS50114	PANTHER:PTHR10071
PANTHER:PTHR10071:SF191	SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI000233B97A	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:21850209..21852333

Molecular Weight (calculated)

35306.7 Da

IEP (calculated)

9.753

GRAVY (calculated)

-0.801

Length

314 amino acids

Sequence
(BLAST)

001: MIPAYRHSVS SVMPLDLNED QNHEFFSPIH HPSSSFSSLS SSYPILFNPP NQDQEARSYD WETTKHLPSH EEEAEKIIPT SGSWGHSVEE SEHKVTVWRK
101: EERNENLAED GSVKWMPSKM RIMRKMLVSN QTDAYTSDNN TTHKFDDHKQ QLSSPLGIDD NSSNNYSDKS NNSIVRVCSD CHTTKTPLWR SGPRGPKSLC
201: NACGIRQRKA RRAMAAAAAA ALGDGAVIVE AEKSVKGKKL QKKKEKKTRI EGAAQMKMKR KLGVGAKASQ SRNKFGFEDL TLRLRKNLAM HQVFPQDEKE
301: AAILLMALSY GLVH

Best Arabidopsis Sequence Match ( AT5G56860.1 )
(BLAST)

001: MDSNFHYSID LNEDQNHHEQ PFFYPLGSSS SLHHHHHHHH HQVPSNSSSS SSSISSLSSY LPFLINSQED QHVAYNNTYH ADHLHLSQPL KAKMFVANGG
101: SSACDHMVPK KETRLKLTIR KKDHEDQPHP LHQNPTKPDS DSDKWLMSPK MRLIKKTITN NKQLIDQTNN NNHKESDHYP LNHKTNFDED HHEDLNFKNV
201: LTRKTTAATT ENRYNTINEN GYSNNNGVIR VCSDCNTTKT PLWRSGPRGP KSLCNACGIR QRKARRAAMA AAAAAGDQEV AVAPRVQQLP LKKKLQNKKK
301: RSNGGEKYNH SPPMVAKAKK CKIKEEEEKE MEAETVAGDS EISKSTTSSN SSISSNKFCF DDLTIMLSKS SAYQQVFPQD EKEAAVLLMA LSYGMVHG

Arabidopsis Description

GATA21GATA transcription factor 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5HZ36]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.