Factsheet for Bra019118.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42753	Canola	nucleus	94.85	99.46
CDY42752	Canola	nucleus	94.59	99.19
CDY67546	Canola	nucleus	91.24	94.15
Bra026461.1-P	Field mustard	nucleus	65.72	70.83
AT4G26150.1	Thale cress	cytosol	63.92	70.45
Bra035633.1-P	Field mustard	nucleus	39.95	51.49
Bra002788.1-P	Field mustard	nucleus	48.97	49.1
Bra006851.1-P	Field mustard	nucleus, plastid	47.94	48.44
Bra009926.1-P	Field mustard	cytosol	8.51	41.77
Bra036600.1-P	Field mustard	nucleus	10.31	38.84
GSMUA_Achr8P24880_001	Banana	nucleus	21.13	37.61
Bra037421.1-P	Field mustard	nucleus	12.11	37.01
KRH19153	Soybean	nucleus	28.87	35.67
KRH02716	Soybean	nucleus	28.61	34.47
Bra020650.1-P	Field mustard	nucleus	12.37	34.29
KRH12382	Soybean	nucleus	27.06	33.33
Bra040288.1-P	Field mustard	nucleus	11.86	33.09
KRH37384	Soybean	nucleus	26.55	30.56
Bra022184.1-P	Field mustard	nucleus	12.11	28.31
Bra021209.1-P	Field mustard	nucleus	12.37	28.07
TraesCS7D01G359900.1	Wheat	nucleus	25.52	27.58
TraesCS7A01G363100.1	Wheat	nucleus	25.26	27.53
HORVU7Hr1G086810.1	Barley	nucleus	25.26	27.22
Bra012742.1-P	Field mustard	nucleus	11.6	26.95
TraesCS6A01G185900.1	Wheat	cytosol	23.45	26.61
TraesCS7B01G264800.1	Wheat	nucleus	24.74	26.59
HORVU6Hr1G039720.2	Barley	cytosol	23.45	26.45
TraesCS6D01G173000.1	Wheat	cytosol	23.2	26.32
Bra033533.1-P	Field mustard	nucleus	12.11	26.26
Os02t0220400-01	Rice	nucleus	23.71	26.06
Zm00001d016361_P001	Maize	nucleus	24.74	25.95
Zm00001d046354_P001	Maize	nucleus	24.48	25.68
EER88552	Sorghum	nucleus	25.26	25.39
Os06t0571800-02	Rice	nucleus	22.68	25.36
TraesCS6B01G214900.1	Wheat	cytosol	22.16	25.15
KXG29816	Sorghum	nucleus	24.23	24.29
Bra039614.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	8.25	23.36
Bra011695.1-P	Field mustard	nucleus	12.63	21.97
Bra017766.1-P	Field mustard	nucleus	10.57	21.69
Bra010563.1-P	Field mustard	cytosol	11.34	20.66
Bra001644.1-P	Field mustard	nucleus	7.73	20.55
Bra012080.1-P	Field mustard	nucleus	11.08	18.22
Bra037221.1-P	Field mustard	nucleus	10.57	17.3
Bra012883.1-P	Field mustard	nucleus	12.37	17.27
Bra036854.1-P	Field mustard	nucleus	12.63	16.95

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EnsemblPlantsGene:Bra019118	EnsemblPlants:Bra019118.1	EnsemblPlants:Bra019118.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088	UniProt:M4DRH5	PFAM:PF00320	ScanProsite:PS00344
PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF191	SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI00025411D1
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

AT5G56860 (E=1e-076) GNC | GNC (GATA, nitrate-inducible, carbon metabolism-involved); transcription factor

Coordinates

chrA03:+:26242452..26243935

Molecular Weight (calculated)

43030.4 Da

IEP (calculated)

9.564

GRAVY (calculated)

-0.749

Length

388 amino acids

Sequence
(BLAST)

001: MGSNFRYTID LNEDHQNHQP FFSSFGSSIH QNHDHQQNVY HHQALSNPTF SSSSLASPSL SYLPFLINSH QDQVHVGYNN HTFHGFLDPH ISQPLETKKF
101: VYDGGSSSSD QMTPEKETRL KLTIRKNDNH HDQTDLPQYP TKVETESNSL KWMSSKVRFM KRKTMIPPTD NNKQYVKNDQ SLNVSNLEED HLNKISKNHY
201: NMIANENGYN GSNNCVTRIC SDCNTTKTPL WRSGPRGPKS LCNACGIRQR KARRAAMAAS GATTTSDVSP PLLKKKIQNK NKRSNKVGSL SSPLASKVHK
301: YKSMTTSVAE AVPMMEGAGG AGAITGALET QGKSTMSSSS TSSSSNKCYF DELAIILSKS SAYQQVFPQD EKEAAILLMA LSYGMVHG

Best Arabidopsis Sequence Match ( AT4G26150.1 )
(BLAST)

001: MGSNFHYTID LNEDQNHQPF FASLGSSLHH HLQQQQQQQQ HFHHQASSNP SSLMSPSLSY FPFLINSRQD QVYVGYNNNT FHDVLDTHIS QPLETKNFVS
101: DGGSSSSDQM VPKKETRLKL TIKKKDNHQD QTDLPQSPIK DMTGTNSLKW ISSKVRLMKK KKAIITTSDS SKQHTNNDQS SNLSNSERQN GYNNDCVIRI
201: CSDCNTTKTP LWRSGPRGPK SLCNACGIRQ RKARRAAMAT ATATAVSGVS PPVMKKKMQN KNKISNGVYK ILSPLPLKVN TCKRMITLEE TALAEDLETQ
301: SNSTMLSSSD NIYFDDLALL LSKSSAYQQV FPQDEKEAAI LLMALSHGMV HG

Arabidopsis Description

GATA22Putative GATA transcription factor 22 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.