Factsheet for Bra012080.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45238	Canola	nucleus	100.0	100.0
CDY30768	Canola	nucleus	88.56	91.67
Bra039614.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	23.31	40.15
PGSC0003DMT400009031	Potato	plastid	40.68	38.87
Bra010563.1-P	Field mustard	cytosol	34.75	38.5
Bra036854.1-P	Field mustard	nucleus	46.61	38.06
Solyc02g085190.1.1	Tomato	plastid	39.83	37.3
Bra009926.1-P	Field mustard	cytosol	12.29	36.71
Bra012883.1-P	Field mustard	nucleus	42.8	36.33
Bra011695.1-P	Field mustard	nucleus	34.32	36.32
Bra017766.1-P	Field mustard	nucleus	28.81	35.98
VIT_04s0023g01840.t01	Wine grape	cytosol, plastid	34.75	34.17
GSMUA_Achr6P27250_001	Banana	cytosol, extracellular, nucleus	32.63	33.19
PGSC0003DMT400040074	Potato	nucleus	34.75	33.06
GSMUA_Achr7P25620_001	Banana	nucleus	32.2	32.62
KRH43324	Soybean	nucleus	18.64	32.35
GSMUA_Achr3P31070_001	Banana	cytosol, nucleus, plastid	28.81	32.23
Bra036600.1-P	Field mustard	nucleus	13.56	31.07
Zm00001d009604_P001	Maize	cytosol, nucleus, plastid	26.69	31.03
Solyc02g062760.2.1	Tomato	nucleus	33.05	30.71
Bra037221.1-P	Field mustard	nucleus	27.97	27.85
TraesCS3B01G269000.1	Wheat	cytosol, extracellular, nucleus	26.27	27.68
Os05t0567900-00	Rice	cytosol, extracellular, plastid	29.24	27.6
Zm00001d043969_P001	Maize	endoplasmic reticulum	27.12	27.47
TraesCS3D01G241100.1	Wheat	cytosol, extracellular, nucleus	26.69	27.39
HORVU3Hr1G059870.2	Barley	cytosol, extracellular, nucleus	26.69	27.16
EES19963	Sorghum	mitochondrion, nucleus, vacuole	26.27	27.07
KXG33047	Sorghum	extracellular	27.97	27.05
TraesCS3A01G240800.1	Wheat	cytosol, extracellular, nucleus	26.69	26.92
Os01t0662800-00	Rice	cytosol, extracellular, nucleus	26.27	25.62
Bra037421.1-P	Field mustard	nucleus	13.56	25.2
Bra020650.1-P	Field mustard	nucleus	14.41	24.29
Bra040288.1-P	Field mustard	nucleus	13.56	23.02
Bra022184.1-P	Field mustard	nucleus	14.41	20.48
Bra021209.1-P	Field mustard	nucleus	13.14	18.13
Bra033533.1-P	Field mustard	nucleus	12.71	16.76
Bra012742.1-P	Field mustard	nucleus	11.44	16.17
Bra035633.1-P	Field mustard	nucleus	18.64	14.62
Bra019118.1-P	Field mustard	nucleus	18.22	11.08
Bra006851.1-P	Field mustard	nucleus, plastid	17.37	10.68
Bra026461.1-P	Field mustard	nucleus	16.1	10.56
Bra002788.1-P	Field mustard	nucleus	16.53	10.08
Bra001644.1-P	Field mustard	nucleus	5.08	8.22

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EnsemblPlantsGene:Bra012080	EnsemblPlants:Bra012080.1	EnsemblPlants:Bra012080.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088	UniProt:M4D6H1	PFAM:PF00320	PFscan:PS50114
PANTHER:PTHR10071	PANTHER:PTHR10071:SF305	SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI00025417DE	InterPro:Znf_GATA
InterPro:Znf_NHR/GATA	SEG:seg	:	:	:	:

Description

AT3G50870 (E=1e-025) MNP | MNP (MONOPOLE); transcription factor

Coordinates

chrA07:+:10146244..10147063

Molecular Weight (calculated)

26225.3 Da

IEP (calculated)

8.416

GRAVY (calculated)

-0.817

Length

236 amino acids

Sequence
(BLAST)

001: MTQGRYCESC GWFHDHTQTC LFVHNGNGCS NIQTAVVDCT LSLGPPSTTT TRLSERDKKK MRRSSTSTRV SSFIDTDTNT SKTSTYSVLP SSNRRISGGG
101: DTLLDRRCTK CDTTSTPLWR NGPRGPKSLC NACGIRFKKE ERRTMDTTRM TASSTVAQDQ YGHHPSSYSN HNNATDQSGS STCNFVASEI MLNHDYGGAG
201: EYYRRDPVDG VNGLHSHSWR LNVEDTAMSL VYDFTR

Best Arabidopsis Sequence Match ( AT3G50870.1 )
(BLAST)

001: MMQTPYTTST QGQYCHSCGM FHHHSQSCCY NNNNNSNAGS YSMVFSMQNG GVFEQNGEDY HHSSSLVDCT LSLGTPSTRL CEEDEKRRRS TSSGASSCIS
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR

Arabidopsis Description

GATA18Uncharacterized protein At3g50870 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVE1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.