Factsheet for Os01t0662800-00

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0662800-00	nucleus, nucleus
Os02t0220400-01	nucleus, nucleus
Os05t0567900-00	nucleus, nucleus
Os06t0571800-02	nucleus, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50870.1	Os01t0662800-00	AT3G50870.1	23335616
AT3G50870.1	Os05t0567900-00	AT3G50870.1	23335616
AT3G50870.1	Os01t0662800-00	AT3G50870.1	23335616
AT3G50870.1	Os05t0567900-00	AT3G50870.1	23335616
AT3G50870.1	Os02t0220400-01	AT4G26150.1	23335616
AT3G50870.1	Os06t0571800-02	AT4G26150.1	23335616
AT3G50870.1	Os02t0220400-01	AT4G26150.1	23335616
AT3G50870.1	Os06t0571800-02	AT4G26150.1	23335616
AT3G50870.1	Os01t0662800-00	AT4G36620.1	23335616
AT3G50870.1	Os05t0567900-00	AT4G36620.1	23335616
AT3G50870.1	Os01t0662800-00	AT4G36620.1	23335616
AT3G50870.1	Os05t0567900-00	AT4G36620.1	23335616
AT3G50870.1	Os02t0220400-01	AT5G56860.1	23335616
AT3G50870.1	Os06t0571800-02	AT5G56860.1	23335616
AT3G50870.1	Os02t0220400-01	AT5G56860.1	23335616
AT3G50870.1	Os06t0571800-02	AT5G56860.1	23335616

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G269000.1	Wheat	cytosol, extracellular, nucleus	76.45	82.59
TraesCS3D01G241100.1	Wheat	cytosol, extracellular, nucleus	77.27	81.3
TraesCS3A01G240800.1	Wheat	cytosol, extracellular, nucleus	76.86	79.49
HORVU3Hr1G059870.2	Barley	cytosol, extracellular, nucleus	76.03	79.31
Zm00001d043969_P001	Maize	endoplasmic reticulum	75.62	78.54
KXG33047	Sorghum	extracellular	76.03	75.41
Os05t0567900-00	Rice	cytosol, extracellular, plastid	64.88	62.8
GSMUA_Achr7P25620_001	Banana	nucleus	45.45	47.21
GSMUA_Achr6P27250_001	Banana	cytosol, extracellular, nucleus	44.21	46.12
GSMUA_Achr3P31070_001	Banana	cytosol, nucleus, plastid	38.43	44.08
KRH30068	Soybean	plastid	26.45	41.03
VIT_04s0023g01840.t01	Wine grape	cytosol, plastid	35.54	35.83
KRH28681	Soybean	nucleus	35.95	35.51
Bra039614.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	19.83	35.04
Solyc02g085190.1.1	Tomato	plastid	35.95	34.52
PGSC0003DMT400009031	Potato	plastid	35.12	34.41
KRH08269	Soybean	nucleus	34.71	33.47
CDY13040	Canola	cytosol	27.27	33.17
CDY72649	Canola	nucleus	27.27	33.0
Os05t0578900-01	Rice	nucleus	38.02	32.97
KRH69915	Soybean	nucleus	34.3	32.94
AT4G36620.1	Thale cress	cytosol	28.51	32.7
CDY60289	Canola	nucleus	27.27	32.67
Bra017766.1-P	Field mustard	nucleus	25.21	32.28
CDY69687	Canola	nucleus	25.21	32.28
Bra010563.1-P	Field mustard	cytosol	28.1	31.92
CDY24779	Canola	nucleus	28.1	31.92
CDY53079	Canola	cytosol	27.27	31.88
CDY51221	Canola	nucleus	26.03	31.34
CDY70754	Canola	nucleus	28.1	30.49
Bra011695.1-P	Field mustard	nucleus	28.1	30.49
CDX72587	Canola	cytosol	28.51	30.4
CDY68627	Canola	nucleus	27.69	30.18
CDX77958	Canola	nucleus	33.06	30.08
CDX69237	Canola	nucleus	27.27	29.6
AT2G18380.1	Thale cress	cytosol	25.21	29.33
CDY28986	Canola	cytosol	32.64	28.83
Solyc02g062760.2.1	Tomato	nucleus	30.17	28.74
Bra036854.1-P	Field mustard	nucleus	34.3	28.72
PGSC0003DMT400040074	Potato	nucleus	29.34	28.63
CDX73777	Canola	nucleus	34.3	28.62
Bra012883.1-P	Field mustard	nucleus	31.82	27.7
CDX90680	Canola	nucleus	31.82	27.7
CDY30768	Canola	nucleus	25.21	26.75
Bra012080.1-P	Field mustard	nucleus	25.62	26.27
CDY45238	Canola	nucleus	25.62	26.27
Bra037221.1-P	Field mustard	nucleus	25.62	26.16
AT3G50870.1	Thale cress	cytosol	31.82	26.1
KRH43324	Soybean	nucleus	14.46	25.74
Os01t0976800-01	Rice	nucleus	14.05	23.94
Os01t0343300-01	Rice	nucleus	12.4	22.9
Os05t0155400-01	Rice	mitochondrion, nucleus, vacuole	13.22	16.58
Os02t0220400-01	Rice	nucleus	20.25	13.88
Os06t0571800-02	Rice	nucleus	16.12	11.24

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EntrezGene:9272543	ProteinID:BAB91742.1	ProteinID:BAH91223.1	ProteinID:BAS73549.1
GO:GO:0000977	GO:GO:0001085	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003682	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355	GO:GO:0006366
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154
GO:GO:0043565	GO:GO:0045944	GO:GO:0046872	InterPro:IPR000679	InterPro:IPR013088	EnsemblPlantsGene:Os01g0662800
EnsemblPlants:Os01t0662800-00	PFAM:PF00320	ScanProsite:PS00344	PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF305
UniProt:Q8LR32	SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI00000A13F7	RefSeq:XP_015638887.1	InterPro:Znf_GATA
InterPro:Znf_NHR/GATA	SEG:seg	:	:	:	:

Description

GATA TRANSCRIPTION FACTOR 9Zinc finger, NHR/GATA-type domain containing protein. (Os01t0662800-00)

Coordinates

chr1:-:27055948..27056849

Molecular Weight (calculated)

24924.1 Da

IEP (calculated)

7.069

GRAVY (calculated)

-0.348

Length

242 amino acids

Sequence
(BLAST)

001: MLHEAAPCTC GLLYGSCGGG CSLLFPAGAP GDHHHHHHYK QYCGAGDGEY PDVPYGGGGS VDCTLSLGTP STRRAEAAVA GLPWDQSSLQ PSCNGRQEMS
101: GAAAPRTEPS GGAGAAAASA PRRCANCDTT STPLWRNGPR GPKSLCNACG IRYKKEERRA AAAAVAPTAL ASDGGVEYAY GYPRQQQQWG CYGPAVAKAA
201: SFGMFGDAAG EDGPCLPWGL GVMPSSPAFG AVREMPSLFQ YY

Best Arabidopsis Sequence Match ( AT2G18380.1 )
(BLAST)

001: MMGYQTNSNF SMFFSSENDD QNHHNYDPYN NFSSSTSVDC TLSLGTPSTR LDDHHRFSSA NSNNISGDFY IHGGNAKTSS YKKGGVAHSL PRRCASCDTT
101: STPLWRNGPK GPKSLCNACG IRFKKEERRA TARNLTISGG GSSAAEVPVE NSYNGGGNYY SHHHHHYASS SPSWAHQNTQ RVPYFSPVPE MEYPYVDNVT
201: ASSFMSWN

Arabidopsis Description

GATA20HANL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.