Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77958 | Canola | nucleus | 76.27 | 84.59 |
| Bra036854.1-P | Field mustard | nucleus | 81.36 | 83.05 |
| CDX73777 | Canola | nucleus | 80.68 | 82.07 |
| CDY28986 | Canola | cytosol | 75.25 | 81.02 |
| CDX90680 | Canola | nucleus | 75.93 | 80.58 |
| Bra012883.1-P | Field mustard | nucleus | 75.93 | 80.58 |
| AT4G36620.1 | Thale cress | cytosol | 41.02 | 57.35 |
| Solyc02g085190.1.1 | Tomato | plastid | 42.03 | 49.21 |
| PGSC0003DMT400009031 | Potato | plastid | 40.0 | 47.77 |
| VIT_04s0023g01840.t01 | Wine grape | cytosol, plastid | 38.64 | 47.5 |
| AT2G18380.1 | Thale cress | cytosol | 30.85 | 43.75 |
| PGSC0003DMT400040074 | Potato | nucleus | 34.24 | 40.73 |
| Solyc02g062760.2.1 | Tomato | nucleus | 33.9 | 39.37 |
| GSMUA_Achr6P27250_001 | Banana | cytosol, extracellular, nucleus | 30.85 | 39.22 |
| GSMUA_Achr3P31070_001 | Banana | cytosol, nucleus, plastid | 25.76 | 36.02 |
| KRH43324 | Soybean | nucleus | 16.27 | 35.29 |
| Zm00001d043969_P001 | Maize | endoplasmic reticulum | 27.8 | 35.19 |
| GSMUA_Achr7P25620_001 | Banana | nucleus | 27.8 | 35.19 |
| Zm00001d009604_P001 | Maize | cytosol, nucleus, plastid | 24.07 | 34.98 |
| TraesCS3B01G269000.1 | Wheat | cytosol, extracellular, nucleus | 26.44 | 34.82 |
| TraesCS3D01G241100.1 | Wheat | cytosol, extracellular, nucleus | 26.78 | 34.35 |
| HORVU3Hr1G059870.2 | Barley | cytosol, extracellular, nucleus | 26.78 | 34.05 |
| TraesCS3A01G240800.1 | Wheat | cytosol, extracellular, nucleus | 26.78 | 33.76 |
| KXG33047 | Sorghum | extracellular | 27.8 | 33.61 |
| EES19963 | Sorghum | mitochondrion, nucleus, vacuole | 25.42 | 32.75 |
| Os05t0567900-00 | Rice | cytosol, extracellular, plastid | 27.46 | 32.4 |
| Os01t0662800-00 | Rice | cytosol, extracellular, nucleus | 26.1 | 31.82 |
| AT5G26930.1 | Thale cress | cytosol | 10.17 | 25.0 |
| AT5G49300.1 | Thale cress | cytosol | 11.53 | 24.46 |
| AT3G06740.1 | Thale cress | nucleus | 11.53 | 22.82 |
| AT3G16870.1 | Thale cress | nucleus | 12.54 | 19.47 |
| AT4G16141.1 | Thale cress | cytosol | 11.19 | 16.75 |
| AT4G26150.1 | Thale cress | cytosol | 16.95 | 14.2 |
| AT5G56860.1 | Thale cress | nucleus | 16.95 | 12.56 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | EntrezGene:824251 | EMBL:AB493644 | ProteinID:AEE78720.1 | ArrayExpress:AT3G50870 |
| EnsemblPlantsGene:AT3G50870 | RefSeq:AT3G50870 | TAIR:AT3G50870 | RefSeq:AT3G50870-TAIR-G | EnsemblPlants:AT3G50870.1 | TAIR:AT3G50870.1 |
| EMBL:AY086746 | Unigene:At.27761 | UniProt:C0SVE1 | ProteinID:CAB42916.1 | GO:GO:0000003 | GO:GO:0000977 |
| GO:GO:0001085 | GO:GO:0001228 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003682 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005667 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006366 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009653 |
| GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009908 | GO:GO:0009909 | GO:GO:0009934 |
| GO:GO:0009987 | GO:GO:0030154 | GO:GO:0042803 | GO:GO:0043565 | GO:GO:0045892 | GO:GO:0045944 |
| GO:GO:0046872 | GO:GO:0048825 | InterPro:IPR000679 | InterPro:IPR013088 | Symbol:MNP | RefSeq:NP_566939.1 |
| PFAM:PF00320 | PO:PO:0000037 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0025022 | ScanProsite:PS00344 | PFscan:PS50114 |
| PANTHER:PTHR10071 | PANTHER:PTHR10071:SF156 | UniProt:Q8LC79 | SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI00001636F7 |
| InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg | : | : | : |
Description
GATA18Uncharacterized protein At3g50870 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVE1]
Coordinates
chr3:+:18910947..18912608
Molecular Weight (calculated)
31833.2 Da
IEP (calculated)
8.006
GRAVY (calculated)
-0.830
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MMQTPYTTST QGQYCHSCGM FHHHSQSCCY NNNNNSNAGS YSMVFSMQNG GVFEQNGEDY HHSSSLVDCT LSLGTPSTRL CEEDEKRRRS TSSGASSCIS
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.