Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDX73777 | nucleus |
| CDX77958 | nucleus |
| CDX88593 | nucleus |
| CDX89358 | nucleus |
| CDX90680 | nucleus |
| CDX94365 | nucleus |
| CDY20709 | nucleus |
| CDY24779 | nucleus |
| CDY28986 | nucleus |
| CDY32755 | nucleus |
| CDY32891 | nucleus |
| CDY42752 | nucleus |
| CDY42753 | nucleus |
| CDY53079 | nucleus |
| CDY65439 | nucleus |
| CDY67546 | nucleus |
| CDY67979 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036854.1-P | Field mustard | nucleus | 98.87 | 91.0 |
| CDX73777 | Canola | nucleus | 96.62 | 88.62 |
| AT3G50870.1 | Thale cress | cytosol | 84.59 | 76.27 |
| CDY28986 | Canola | cytosol | 77.44 | 75.18 |
| CDX90680 | Canola | nucleus | 78.57 | 75.18 |
| CDY24779 | Canola | nucleus | 42.11 | 52.58 |
| CDX72587 | Canola | cytosol | 43.98 | 51.54 |
| CDY53079 | Canola | cytosol | 39.47 | 50.72 |
| CDY70754 | Canola | nucleus | 41.73 | 49.78 |
| CDY69687 | Canola | nucleus | 34.96 | 49.21 |
| CDY68627 | Canola | nucleus | 40.98 | 49.1 |
| CDX69237 | Canola | nucleus | 40.6 | 48.43 |
| Solyc02g085190.1.1 | Tomato | plastid | 43.61 | 46.03 |
| CDY45238 | Canola | nucleus | 40.6 | 45.76 |
| CDY13040 | Canola | cytosol | 34.21 | 45.73 |
| CDY72649 | Canola | nucleus | 34.21 | 45.5 |
| PGSC0003DMT400009031 | Potato | plastid | 42.11 | 45.34 |
| VIT_04s0023g01840.t01 | Wine grape | cytosol, plastid | 40.23 | 44.58 |
| CDY60289 | Canola | nucleus | 33.46 | 44.06 |
| CDY30768 | Canola | nucleus | 37.59 | 43.86 |
| CDY51221 | Canola | nucleus | 32.33 | 42.79 |
| PGSC0003DMT400040074 | Potato | nucleus | 37.97 | 40.73 |
| Solyc02g062760.2.1 | Tomato | nucleus | 37.22 | 38.98 |
| GSMUA_Achr6P27250_001 | Banana | cytosol, extracellular, nucleus | 33.46 | 38.36 |
| Zm00001d009604_P001 | Maize | cytosol, nucleus, plastid | 27.44 | 35.96 |
| Zm00001d043969_P001 | Maize | endoplasmic reticulum | 31.2 | 35.62 |
| KXG33047 | Sorghum | extracellular | 31.95 | 34.84 |
| GSMUA_Achr3P31070_001 | Banana | cytosol, nucleus, plastid | 27.44 | 34.6 |
| TraesCS3B01G269000.1 | Wheat | cytosol, extracellular, nucleus | 28.95 | 34.38 |
| GSMUA_Achr7P25620_001 | Banana | nucleus | 30.08 | 34.33 |
| TraesCS3D01G241100.1 | Wheat | cytosol, extracellular, nucleus | 29.32 | 33.91 |
| HORVU3Hr1G059870.2 | Barley | cytosol, extracellular, nucleus | 29.32 | 33.62 |
| TraesCS3A01G240800.1 | Wheat | cytosol, extracellular, nucleus | 29.32 | 33.33 |
| Os05t0567900-00 | Rice | cytosol, extracellular, plastid | 31.2 | 33.2 |
| EES19963 | Sorghum | mitochondrion, nucleus, vacuole | 28.57 | 33.19 |
| KRH43324 | Soybean | nucleus | 16.92 | 33.09 |
| Os01t0662800-00 | Rice | cytosol, extracellular, nucleus | 30.08 | 33.06 |
| CDY25008 | Canola | nucleus | 11.28 | 30.0 |
| CDX87024 | Canola | nucleus | 11.28 | 29.13 |
| CDX86241 | Canola | nucleus | 13.16 | 27.56 |
| CDY05639 | Canola | nucleus | 13.53 | 27.48 |
| CDX85400 | Canola | nucleus | 12.78 | 26.77 |
| CDY68751 | Canola | cytosol, mitochondrion | 10.15 | 26.73 |
| CDY33918 | Canola | nucleus | 13.53 | 25.53 |
| CDY34933 | Canola | nucleus | 12.78 | 24.29 |
| CDY34429 | Canola | cytosol | 12.78 | 22.22 |
| CDX95897 | Canola | nucleus | 13.53 | 21.95 |
| CDX92103 | Canola | nucleus | 13.53 | 21.69 |
| CDX90545 | Canola | nucleus | 10.9 | 19.73 |
| CDY32214 | Canola | nucleus | 12.78 | 18.99 |
| CDX82388 | Canola | nucleus | 12.03 | 18.39 |
| CDY34981 | Canola | nucleus | 11.65 | 18.13 |
| CDY09717 | Canola | nucleus | 12.03 | 18.08 |
| CDX75893 | Canola | nucleus | 12.41 | 18.03 |
| CDY52723 | Canola | nucleus | 12.03 | 17.78 |
| CDX80603 | Canola | nucleus | 9.77 | 17.69 |
| CDX88593 | Canola | nucleus | 19.17 | 14.37 |
| CDY20709 | Canola | nucleus | 20.3 | 13.71 |
| CDY67979 | Canola | nucleus | 19.92 | 13.52 |
| CDY65439 | Canola | nucleus | 19.17 | 13.28 |
| CDY42753 | Canola | nucleus | 18.05 | 12.97 |
| CDY42752 | Canola | nucleus | 18.05 | 12.97 |
| CDX94365 | Canola | nucleus | 17.29 | 12.78 |
| CDY32755 | Canola | nucleus | 18.42 | 12.66 |
| CDY32891 | Canola | nucleus | 18.42 | 12.63 |
| CDY67546 | Canola | nucleus | 17.29 | 12.23 |
| CDX89358 | Canola | nucleus | 16.54 | 12.22 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:A0A078CS11 | EnsemblPlants:CDX77958 | ProteinID:CDX77958 | ProteinID:CDX77958.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00129221001 | InterPro:IPR000679 | InterPro:IPR013088 | PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 |
| PANTHER:PTHR10071 | PANTHER:PTHR10071:SF305 | SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI0004EEE960 | InterPro:Znf_GATA |
| InterPro:Znf_NHR/GATA | SEG:seg | : | : | : | : |
Description
BnaA09g31530D
Coordinates
chrLK031814:+:292171..293418
Molecular Weight (calculated)
28560.6 Da
IEP (calculated)
7.859
GRAVY (calculated)
-0.731
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MMQTPYNTSM QGQYCHSCGM FHHHNQSSCY NNNNSNAGSY STVFSMQSGG VYEPNGEDYY SSSVVDCTLS LGTPSTRLCE EDEKRRRSTP SGANVPSYSI
101: ANSIKPGRGC SGGNGSGGGD SLLARRCANC DTTSTPLWRN GPRGPKSLCN ACGIRFKKEE RRTTAASVNA VVGAAPVAVD HYSHHNAGYN NYSIATGNNN
201: NGTSWGHHTT QRVPCNYPAN EIRFMDDYGG AGANNCDSDG GHGGVPFLSW RLNVADRASL VHDFTR
101: ANSIKPGRGC SGGNGSGGGD SLLARRCANC DTTSTPLWRN GPRGPKSLCN ACGIRFKKEE RRTTAASVNA VVGAAPVAVD HYSHHNAGYN NYSIATGNNN
201: NGTSWGHHTT QRVPCNYPAN EIRFMDDYGG AGANNCDSDG GHGGVPFLSW RLNVADRASL VHDFTR
001: MMQTPYTTST QGQYCHSCGM FHHHSQSCCY NNNNNSNAGS YSMVFSMQNG GVFEQNGEDY HHSSSLVDCT LSLGTPSTRL CEEDEKRRRS TSSGASSCIS
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR
Arabidopsis Description
GATA18Uncharacterized protein At3g50870 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVE1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.