Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68627 | Canola | nucleus | 97.76 | 98.2 |
| Bra011695.1-P | Field mustard | nucleus | 97.31 | 97.31 |
| CDY70754 | Canola | nucleus | 97.31 | 97.31 |
| CDY69687 | Canola | nucleus | 71.75 | 84.66 |
| CDX72587 | Canola | cytosol | 81.61 | 80.18 |
| CDY24779 | Canola | nucleus | 76.23 | 79.81 |
| CDY53079 | Canola | cytosol | 72.65 | 78.26 |
| CDY60289 | Canola | nucleus | 44.39 | 49.01 |
| CDY72649 | Canola | nucleus | 43.5 | 48.5 |
| CDY51221 | Canola | nucleus | 43.5 | 48.26 |
| CDY13040 | Canola | cytosol | 42.6 | 47.74 |
| CDY28986 | Canola | cytosol | 51.12 | 41.61 |
| CDX77958 | Canola | nucleus | 48.43 | 40.6 |
| PGSC0003DMT400009031 | Potato | plastid | 44.84 | 40.49 |
| CDX90680 | Canola | nucleus | 50.22 | 40.29 |
| Solyc02g085190.1.1 | Tomato | plastid | 44.84 | 39.68 |
| CDX73777 | Canola | nucleus | 51.57 | 39.66 |
| VIT_04s0023g01840.t01 | Wine grape | cytosol, plastid | 40.81 | 37.92 |
| CDY45238 | Canola | nucleus | 36.32 | 34.32 |
| GSMUA_Achr6P27250_001 | Banana | cytosol, extracellular, nucleus | 33.63 | 32.33 |
| PGSC0003DMT400040074 | Potato | nucleus | 35.87 | 32.26 |
| CDY30768 | Canola | nucleus | 32.29 | 31.58 |
| Solyc02g062760.2.1 | Tomato | nucleus | 35.43 | 31.1 |
| Zm00001d009604_P001 | Maize | cytosol, nucleus, plastid | 27.35 | 30.05 |
| Zm00001d043969_P001 | Maize | endoplasmic reticulum | 31.39 | 30.04 |
| TraesCS3B01G269000.1 | Wheat | cytosol, extracellular, nucleus | 30.04 | 29.91 |
| GSMUA_Achr7P25620_001 | Banana | nucleus | 30.94 | 29.61 |
| TraesCS3D01G241100.1 | Wheat | cytosol, extracellular, nucleus | 30.49 | 29.57 |
| HORVU3Hr1G059870.2 | Barley | cytosol, extracellular, nucleus | 30.49 | 29.31 |
| TraesCS3A01G240800.1 | Wheat | cytosol, extracellular, nucleus | 30.49 | 29.06 |
| Os05t0567900-00 | Rice | cytosol, extracellular, plastid | 31.84 | 28.4 |
| CDX87024 | Canola | nucleus | 13.0 | 28.16 |
| CDY25008 | Canola | nucleus | 12.56 | 28.0 |
| GSMUA_Achr3P31070_001 | Banana | cytosol, nucleus, plastid | 26.46 | 27.96 |
| KXG33047 | Sorghum | extracellular | 30.49 | 27.87 |
| EES19963 | Sorghum | mitochondrion, nucleus, vacuole | 28.25 | 27.51 |
| Os01t0662800-00 | Rice | cytosol, extracellular, nucleus | 29.6 | 27.27 |
| KRH43324 | Soybean | nucleus | 16.59 | 27.21 |
| CDY68751 | Canola | cytosol, mitochondrion | 12.11 | 26.73 |
| CDX85400 | Canola | nucleus | 14.8 | 25.98 |
| CDX86241 | Canola | nucleus | 14.35 | 25.2 |
| CDY05639 | Canola | nucleus | 14.8 | 25.19 |
| CDY33918 | Canola | nucleus | 14.35 | 22.7 |
| CDY34933 | Canola | nucleus | 13.9 | 22.14 |
| CDX95897 | Canola | nucleus | 15.25 | 20.73 |
| CDX92103 | Canola | nucleus | 15.25 | 20.48 |
| CDY34429 | Canola | cytosol | 13.9 | 20.26 |
| CDX82388 | Canola | nucleus | 14.35 | 18.39 |
| CDX90545 | Canola | nucleus | 12.11 | 18.37 |
| CDX80603 | Canola | nucleus | 12.11 | 18.37 |
| CDX75893 | Canola | nucleus | 14.8 | 18.03 |
| CDY34981 | Canola | nucleus | 13.45 | 17.54 |
| CDY32214 | Canola | nucleus | 13.9 | 17.32 |
| CDY52723 | Canola | nucleus | 13.9 | 17.22 |
| CDY09717 | Canola | nucleus | 13.45 | 16.95 |
| CDY42753 | Canola | nucleus | 21.97 | 13.24 |
| CDY42752 | Canola | nucleus | 21.97 | 13.24 |
| CDX88593 | Canola | nucleus | 21.08 | 13.24 |
| CDY67546 | Canola | nucleus | 21.52 | 12.77 |
| CDY67979 | Canola | nucleus | 21.97 | 12.5 |
| CDY20709 | Canola | nucleus | 21.97 | 12.44 |
| CDY65439 | Canola | nucleus | 21.08 | 12.24 |
| CDX94365 | Canola | nucleus | 18.83 | 11.67 |
| CDY32755 | Canola | nucleus | 20.18 | 11.63 |
| CDX89358 | Canola | nucleus | 18.39 | 11.39 |
| CDY32891 | Canola | nucleus | 19.73 | 11.34 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:A0A078BY21 | EnsemblPlants:CDX69237 | ProteinID:CDX69237 | ProteinID:CDX69237.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00131043001 | InterPro:IPR000679 | InterPro:IPR013088 | PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 |
| PANTHER:PTHR10071 | PANTHER:PTHR10071:SF305 | SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI0004EDCAD5 | InterPro:Znf_GATA |
| InterPro:Znf_NHR/GATA | SEG:seg | : | : | : | : |
Description
BnaC01g02160D
Coordinates
chrLK031789:-:3629263..3630415
Molecular Weight (calculated)
24538.8 Da
IEP (calculated)
7.167
GRAVY (calculated)
-0.803
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLSMFFSSE NDVIHHHSSP YASVDCTLSL GTPSTRLFND DDDRRFSTHT SNNISNALGS WDFLHGGKKA GGGGGNNLVA RHCASCDTTS TPLWRNGPSG
101: PKSLCNACGI RFKKEERRAS AAGNSTSGGG LTAFGVPASD HHGGADYYYN NNSNNNHYYA SSSPWTHHQQ QNTQRVPYYS PANNNEYSFV DDVRERHDIT
201: TDPFLSWRLN VADRTRLVHD CTM
101: PKSLCNACGI RFKKEERRAS AAGNSTSGGG LTAFGVPASD HHGGADYYYN NNSNNNHYYA SSSPWTHHQQ QNTQRVPYYS PANNNEYSFV DDVRERHDIT
201: TDPFLSWRLN VADRTRLVHD CTM
001: MGFSMFFSPE NDVSHHSSPY ASVDCTLSLG TPSTRLCNED DERRFSSHTS DTIGWDFLNG SKKGGGGGGH NLLARRCANC DTTSTPLWRN GPRGPKSLCN
101: ACGIRFKKEE RRASTARNST SGGGSTAAGV PTLDHQASAN YYYNNNNQYA SSSPWHHQHN TQRVPYYSPA NNEYSYVDDV RVVDHDVTTD PFLSWRLNVA
201: DRTGLVHDFT M
101: ACGIRFKKEE RRASTARNST SGGGSTAAGV PTLDHQASAN YYYNNNNQYA SSSPWHHQHN TQRVPYYSPA NNEYSYVDDV RVVDHDVTTD PFLSWRLNVA
201: DRTGLVHDFT M
Arabidopsis Description
GATA19Uncharacterized protein At4g36620 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVL8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.