Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY28683 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G56860.1 | CDY28683 | AT3G01320.1 | 19962994 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035633.1-P | Field mustard | nucleus | 74.23 | 96.68 |
| CDY20709 | Canola | nucleus | 96.17 | 95.69 |
| CDY32891 | Canola | nucleus | 81.38 | 82.22 |
| CDY65439 | Canola | nucleus | 79.59 | 81.25 |
| CDY32755 | Canola | nucleus | 79.85 | 80.88 |
| AT5G56860.1 | Thale cress | nucleus | 81.12 | 79.9 |
| CDX88593 | Canola | nucleus | 72.19 | 79.72 |
| CDY42752 | Canola | nucleus | 50.26 | 53.24 |
| CDY42753 | Canola | nucleus | 50.0 | 52.97 |
| CDY67546 | Canola | nucleus | 50.0 | 52.13 |
| CDX94365 | Canola | nucleus | 47.7 | 51.94 |
| CDX89358 | Canola | nucleus | 46.43 | 50.56 |
| CDY25008 | Canola | nucleus | 10.46 | 41.0 |
| KRH19153 | Soybean | nucleus | 31.63 | 39.49 |
| CDX87024 | Canola | nucleus | 10.2 | 38.84 |
| KRH02716 | Soybean | nucleus | 31.63 | 38.51 |
| GSMUA_Achr8P24880_001 | Banana | nucleus | 21.17 | 38.07 |
| CDY05639 | Canola | nucleus | 12.24 | 36.64 |
| CDX85400 | Canola | nucleus | 11.73 | 36.22 |
| CDX86241 | Canola | nucleus | 11.73 | 36.22 |
| KRH12382 | Soybean | nucleus | 28.83 | 35.87 |
| CDY33918 | Canola | nucleus | 11.99 | 33.33 |
| CDY68751 | Canola | cytosol, mitochondrion | 8.42 | 32.67 |
| KRH37384 | Soybean | nucleus | 27.81 | 32.34 |
| CDY34933 | Canola | nucleus | 11.48 | 32.14 |
| TraesCS7A01G363100.1 | Wheat | nucleus | 27.55 | 30.34 |
| TraesCS7D01G359900.1 | Wheat | nucleus | 27.55 | 30.08 |
| HORVU7Hr1G086810.1 | Barley | nucleus | 27.04 | 29.44 |
| CDY34429 | Canola | cytosol | 11.48 | 29.41 |
| CDX90545 | Canola | nucleus | 10.97 | 29.25 |
| TraesCS7B01G264800.1 | Wheat | nucleus | 26.79 | 29.09 |
| CDX92103 | Canola | nucleus | 11.99 | 28.31 |
| TraesCS6A01G185900.1 | Wheat | cytosol | 24.49 | 28.07 |
| Zm00001d046354_P001 | Maize | nucleus | 26.28 | 27.84 |
| TraesCS6D01G173000.1 | Wheat | cytosol | 24.23 | 27.78 |
| EER88552 | Sorghum | nucleus | 27.3 | 27.72 |
| HORVU6Hr1G039720.2 | Barley | cytosol | 24.23 | 27.62 |
| Zm00001d016361_P001 | Maize | nucleus | 25.77 | 27.3 |
| TraesCS6B01G214900.1 | Wheat | cytosol | 23.72 | 27.19 |
| Os02t0220400-01 | Rice | nucleus | 24.23 | 26.91 |
| CDY34981 | Canola | nucleus | 11.73 | 26.9 |
| CDY32214 | Canola | nucleus | 12.24 | 26.82 |
| CDY52723 | Canola | nucleus | 12.24 | 26.67 |
| Os06t0571800-02 | Rice | nucleus | 23.47 | 26.51 |
| CDX95897 | Canola | nucleus | 10.97 | 26.22 |
| CDX82388 | Canola | nucleus | 11.48 | 25.86 |
| CDX80603 | Canola | nucleus | 9.69 | 25.85 |
| KXG29816 | Sorghum | nucleus | 25.51 | 25.84 |
| CDX75893 | Canola | nucleus | 11.73 | 25.14 |
| CDY09717 | Canola | nucleus | 11.22 | 24.86 |
| CDY69687 | Canola | nucleus | 10.71 | 22.22 |
| CDY68627 | Canola | nucleus | 12.5 | 22.07 |
| CDX69237 | Canola | nucleus | 12.5 | 21.97 |
| CDY53079 | Canola | cytosol | 11.48 | 21.74 |
| CDY13040 | Canola | cytosol | 10.97 | 21.61 |
| CDY70754 | Canola | nucleus | 12.24 | 21.52 |
| CDY72649 | Canola | nucleus | 10.71 | 21.0 |
| CDY60289 | Canola | nucleus | 10.71 | 20.79 |
| CDX72587 | Canola | cytosol | 11.99 | 20.7 |
| CDY24779 | Canola | nucleus | 11.22 | 20.66 |
| CDX77958 | Canola | nucleus | 13.52 | 19.92 |
| CDY51221 | Canola | nucleus | 10.2 | 19.9 |
| CDY28986 | Canola | cytosol | 13.78 | 19.71 |
| CDX90680 | Canola | nucleus | 13.78 | 19.42 |
| CDY45238 | Canola | nucleus | 11.48 | 19.07 |
| CDY30768 | Canola | nucleus | 10.71 | 18.42 |
| CDX73777 | Canola | nucleus | 13.52 | 18.28 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:A0A078JMF4 | UniProt:A0A078JMF4 | EnsemblPlants:CDY67979 | ProteinID:CDY67979 |
| ProteinID:CDY67979.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00068371001 | InterPro:IPR000679 | InterPro:IPR013088 |
| PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF191 | SMART:SM00401 |
| SUPFAM:SSF57716 | UniParc:UPI0004EDB86E | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg | : |
Description
BnaC02g44480DBnaC02g44480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JMF4]
Coordinates
chrLK036720:+:350..2598
Molecular Weight (calculated)
44083.5 Da
IEP (calculated)
9.123
GRAVY (calculated)
-0.931
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSDFHYSID LNEDQNHHEQ PFLYPFGSSS SILHNQQQHQ HHNHQVPSNS SSSISSLSSY LPFLINSQED HYVAYNNTCH DDHLHLSQPL KAKMFNGGSS
101: SSYDHTVPKK ERRLKLTIRK KDHHDDQTDF PHQNPTKLNS GSDKWLMSPK MRLIKKTITN NKQRIDHTNS NDNNHKEDHY PLDKTTFKED HDEELKKVST
201: RTTTAVTTEK RCNTINETGY GNNNGVIRVC SDCNTTKTPL WRSGPRGPKS LCNACGIRQR KARRAAMAAA VAAGDDQEVV ARLQQLPVKK KLQNKRKRSN
301: GGDKYNLSSP VVAKTKKCKL KEEEDDAAIV AGDSEISKST TSSGSSVLSN KFCFDDLTIM LSKSSAYQQV FPQDEKEAAI LLMALSYGMV HG
101: SSYDHTVPKK ERRLKLTIRK KDHHDDQTDF PHQNPTKLNS GSDKWLMSPK MRLIKKTITN NKQRIDHTNS NDNNHKEDHY PLDKTTFKED HDEELKKVST
201: RTTTAVTTEK RCNTINETGY GNNNGVIRVC SDCNTTKTPL WRSGPRGPKS LCNACGIRQR KARRAAMAAA VAAGDDQEVV ARLQQLPVKK KLQNKRKRSN
301: GGDKYNLSSP VVAKTKKCKL KEEEDDAAIV AGDSEISKST TSSGSSVLSN KFCFDDLTIM LSKSSAYQQV FPQDEKEAAI LLMALSYGMV HG
001: MDSNFHYSID LNEDQNHHEQ PFFYPLGSSS SLHHHHHHHH HQVPSNSSSS SSSISSLSSY LPFLINSQED QHVAYNNTYH ADHLHLSQPL KAKMFVANGG
101: SSACDHMVPK KETRLKLTIR KKDHEDQPHP LHQNPTKPDS DSDKWLMSPK MRLIKKTITN NKQLIDQTNN NNHKESDHYP LNHKTNFDED HHEDLNFKNV
201: LTRKTTAATT ENRYNTINEN GYSNNNGVIR VCSDCNTTKT PLWRSGPRGP KSLCNACGIR QRKARRAAMA AAAAAGDQEV AVAPRVQQLP LKKKLQNKKK
301: RSNGGEKYNH SPPMVAKAKK CKIKEEEEKE MEAETVAGDS EISKSTTSSN SSISSNKFCF DDLTIMLSKS SAYQQVFPQD EKEAAVLLMA LSYGMVHG
101: SSACDHMVPK KETRLKLTIR KKDHEDQPHP LHQNPTKPDS DSDKWLMSPK MRLIKKTITN NKQLIDQTNN NNHKESDHYP LNHKTNFDED HHEDLNFKNV
201: LTRKTTAATT ENRYNTINEN GYSNNNGVIR VCSDCNTTKT PLWRSGPRGP KSLCNACGIR QRKARRAAMA AAAAAGDQEV AVAPRVQQLP LKKKLQNKKK
301: RSNGGEKYNH SPPMVAKAKK CKIKEEEEKE MEAETVAGDS EISKSTTSSN SSISSNKFCF DDLTIMLSKS SAYQQVFPQD EKEAAVLLMA LSYGMVHG
Arabidopsis Description
GATA21GATA transcription factor 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5HZ36]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.