Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82388 | Canola | nucleus | 87.98 | 92.53 |
| CDX95897 | Canola | nucleus | 71.04 | 79.27 |
| CDY34981 | Canola | nucleus | 72.13 | 77.19 |
| CDX92103 | Canola | nucleus | 69.4 | 76.51 |
| AT3G16870.1 | Thale cress | nucleus | 78.14 | 75.26 |
| CDY52723 | Canola | nucleus | 73.77 | 75.0 |
| CDX90545 | Canola | nucleus | 55.19 | 68.71 |
| CDY34429 | Canola | cytosol | 57.38 | 68.63 |
| CDY09717 | Canola | nucleus | 59.56 | 61.58 |
| CDY32214 | Canola | nucleus | 59.02 | 60.34 |
| CDX85400 | Canola | nucleus | 35.52 | 51.18 |
| CDX86241 | Canola | nucleus | 35.52 | 51.18 |
| CDY05639 | Canola | nucleus | 35.52 | 49.62 |
| CDX87024 | Canola | nucleus | 26.78 | 47.57 |
| CDY33918 | Canola | nucleus | 36.07 | 46.81 |
| CDY25008 | Canola | nucleus | 25.14 | 46.0 |
| GSMUA_Achr3P00700_001 | Banana | nucleus | 28.42 | 41.94 |
| CDY34933 | Canola | nucleus | 30.05 | 39.29 |
| PGSC0003DMT400011779 | Potato | nucleus | 35.52 | 38.69 |
| Solyc12g099370.1.1 | Tomato | nucleus | 35.52 | 38.69 |
| GSMUA_Achr8P33850_001 | Banana | nucleus | 31.15 | 38.26 |
| KXG32453 | Sorghum | nucleus | 25.68 | 37.6 |
| GSMUA_Achr7P03800_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 28.96 | 37.32 |
| Solyc05g054400.2.1 | Tomato | nucleus | 39.89 | 37.06 |
| Os01t0343300-01 | Rice | nucleus | 26.23 | 36.64 |
| PGSC0003DMT400060241 | Potato | nucleus | 39.34 | 36.55 |
| GSMUA_Achr1P26550_001 | Banana | nucleus | 27.87 | 35.92 |
| Os01t0976800-01 | Rice | nucleus | 27.87 | 35.92 |
| Zm00001d037605_P001 | Maize | nucleus | 27.32 | 34.97 |
| CDY68751 | Canola | cytosol, mitochondrion | 19.13 | 34.65 |
| Zm00001d009193_P001 | Maize | plastid | 25.68 | 33.81 |
| HORVU5Hr1G116310.1 | Barley | nucleus | 29.51 | 33.33 |
| GSMUA_Achr1P14780_001 | Banana | nucleus | 22.95 | 33.33 |
| TraesCS3A01G538400.1 | Wheat | nucleus | 30.05 | 32.74 |
| TraesCS5D01G508800.1 | Wheat | nucleus | 28.96 | 32.72 |
| EER93149 | Sorghum | nucleus | 27.87 | 32.48 |
| TraesCS1B01G126600.1 | Wheat | cytosol | 25.68 | 32.19 |
| TraesCS1D01G106100.1 | Wheat | cytosol | 25.68 | 32.19 |
| Zm00001d040775_P001 | Maize | nucleus | 25.68 | 31.97 |
| Zm00001d034751_P001 | Maize | nucleus | 28.42 | 31.9 |
| KXG21349 | Sorghum | cytosol | 26.78 | 31.41 |
| CDX80603 | Canola | nucleus | 25.14 | 31.29 |
| TraesCS3D01G544000.1 | Wheat | nucleus | 30.6 | 31.28 |
| TraesCS5B01G508800.1 | Wheat | nucleus | 28.42 | 31.14 |
| TraesCS3B01G603900.1 | Wheat | nucleus | 30.6 | 31.11 |
| HORVU6Hr1G093630.3 | Barley | mitochondrion | 21.86 | 29.85 |
| TraesCS1A01G097300.1 | Wheat | cytosol | 25.14 | 28.93 |
| Os05t0155400-01 | Rice | mitochondrion, nucleus, vacuole | 28.96 | 27.46 |
| Zm00001d011771_P001 | Maize | nucleus | 28.96 | 27.18 |
| TraesCS4A01G364700.1 | Wheat | nucleus | 26.78 | 27.07 |
| EES04307 | Sorghum | nucleus | 31.15 | 26.27 |
| HORVU1Hr1G022710.3 | Barley | plastid | 26.23 | 22.22 |
| CDY60289 | Canola | nucleus | 18.58 | 16.83 |
| CDY13040 | Canola | cytosol | 18.03 | 16.58 |
| CDY72649 | Canola | nucleus | 18.03 | 16.5 |
| CDY51221 | Canola | nucleus | 18.03 | 16.42 |
| CDY53079 | Canola | cytosol | 18.03 | 15.94 |
| CDY69687 | Canola | nucleus | 15.85 | 15.34 |
| CDY68627 | Canola | nucleus | 18.03 | 14.86 |
| CDX69237 | Canola | nucleus | 18.03 | 14.8 |
| CDY70754 | Canola | nucleus | 18.03 | 14.8 |
| CDY24779 | Canola | nucleus | 16.94 | 14.55 |
| CDX72587 | Canola | cytosol | 18.03 | 14.54 |
| CDX89358 | Canola | nucleus | 27.32 | 13.89 |
| CDX94365 | Canola | nucleus | 27.32 | 13.89 |
| CDY45238 | Canola | nucleus | 17.49 | 13.56 |
| CDY42753 | Canola | nucleus | 26.78 | 13.24 |
| CDY42752 | Canola | nucleus | 26.78 | 13.24 |
| CDY30768 | Canola | nucleus | 16.39 | 13.16 |
| CDX88593 | Canola | nucleus | 25.14 | 12.96 |
| CDY67546 | Canola | nucleus | 25.68 | 12.5 |
| CDX77958 | Canola | nucleus | 18.03 | 12.41 |
| CDY28986 | Canola | cytosol | 18.03 | 12.04 |
| CDY32755 | Canola | nucleus | 25.14 | 11.89 |
| CDY32891 | Canola | nucleus | 25.14 | 11.86 |
| CDY67979 | Canola | nucleus | 25.14 | 11.73 |
| CDX73777 | Canola | nucleus | 18.58 | 11.72 |
| CDY65439 | Canola | nucleus | 24.59 | 11.72 |
| CDX90680 | Canola | nucleus | 17.49 | 11.51 |
| CDY20709 | Canola | nucleus | 24.59 | 11.42 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:A0A078CLE0 | EnsemblPlants:CDX75893 | ProteinID:CDX75893 | ProteinID:CDX75893.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00123895001 | InterPro:IPR000679 | InterPro:IPR013088 | PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 |
| PANTHER:PTHR10071 | PANTHER:PTHR10071:SF242 | SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI0004EAD411 | InterPro:Znf_GATA |
| InterPro:Znf_NHR/GATA | SEG:seg | : | : | : | : |
Description
BnaC03g39760D
Coordinates
chrLK031805:-:1670602..1671479
Molecular Weight (calculated)
19388.6 Da
IEP (calculated)
10.076
GRAVY (calculated)
-0.871
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEGSVESKS KVDSAGELSD VDNENCSSSG SGGGGSSGET KRTCVDCGTL RTPLWRGGPA GPKSLCNACG IKSRKKRQAA LGIKPEEKKR NRKSNSSSDS
101: DLSFDDHRDA KKKTNKGGDD SSSSKRASNS SSSEGVSKYL DLGFKVPVMK RSAVEKKRLW KKLGEEERAA VLLMALSCGS VFS
101: DLSFDDHRDA KKKTNKGGDD SSSSKRASNS SSSEGVSKYL DLGFKVPVMK RSAVEKKRLW KKLGEEERAA VLLMALSCGS VFS
001: MSEGSEDTKT KLDSAGELSD VDNENCSSSG SGGGSSSGDT KRTCVDCGTI RTPLWRGGPA GPKSLCNACG IKSRKKRQAA LGMRSEEKKK NRKSNCNNDL
101: NLDHRNAKKY KINIVDDGKI DIDDDPKICN NKRSSSSSSN KGVSKFLDLG FKVPVMKRSA VEKKRLWRKL GEEERAAVLL MALSCSSVYA
101: NLDHRNAKKY KINIVDDGKI DIDDDPKICN NKRSSSSSSN KGVSKFLDLG FKVPVMKRSA VEKKRLWRKL GEEERAAVLL MALSCSSVYA
Arabidopsis Description
GATA17Uncharacterized protein At3g16870 [Source:UniProtKB/TrEMBL;Acc:Q0WPA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.