Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P00700_001 | Banana | nucleus | 59.15 | 67.74 |
| KRH68462 | Soybean | cytosol | 33.8 | 60.0 |
| GSMUA_Achr7P03800_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 54.23 | 54.23 |
| GSMUA_Achr8P33850_001 | Banana | nucleus | 54.93 | 52.35 |
| Solyc09g075610.2.1 | Tomato | plastid | 31.69 | 50.56 |
| KRG96744 | Soybean | cytosol, mitochondrion, nucleus | 28.17 | 48.19 |
| PGSC0003DMT400081417 | Potato | nucleus | 33.8 | 45.28 |
| GSMUA_Achr1P14780_001 | Banana | nucleus | 40.14 | 45.24 |
| CDX86241 | Canola | nucleus | 40.14 | 44.88 |
| Bra037421.1-P | Field mustard | nucleus | 40.14 | 44.88 |
| VIT_14s0060g01520.t01 | Wine grape | nucleus | 38.73 | 44.35 |
| CDY05639 | Canola | nucleus | 40.85 | 44.27 |
| CDX85400 | Canola | nucleus | 39.44 | 44.09 |
| CDY25008 | Canola | nucleus | 30.99 | 44.0 |
| Bra020650.1-P | Field mustard | nucleus | 42.25 | 42.86 |
| CDX87024 | Canola | nucleus | 30.99 | 42.72 |
| CDY33918 | Canola | nucleus | 42.25 | 42.55 |
| AT5G49300.1 | Thale cress | cytosol | 41.55 | 42.45 |
| KRH02314 | Soybean | nucleus | 41.55 | 42.14 |
| Bra009926.1-P | Field mustard | cytosol | 22.54 | 40.51 |
| AT3G06740.1 | Thale cress | nucleus | 42.25 | 40.27 |
| Bra036600.1-P | Field mustard | nucleus | 28.87 | 39.81 |
| VIT_05s0077g01450.t01 | Wine grape | nucleus | 42.25 | 39.22 |
| AT5G26930.1 | Thale cress | cytosol | 33.1 | 39.17 |
| Os01t0976800-01 | Rice | nucleus | 38.73 | 38.73 |
| EER93149 | Sorghum | nucleus | 42.25 | 38.22 |
| CDY34933 | Canola | nucleus | 36.62 | 37.14 |
| Zm00001d034751_P001 | Maize | nucleus | 42.25 | 36.81 |
| Bra040288.1-P | Field mustard | nucleus | 35.92 | 36.69 |
| HORVU5Hr1G116310.1 | Barley | nucleus | 40.85 | 35.8 |
| KRH50773 | Soybean | nucleus | 39.44 | 35.44 |
| TraesCS5D01G508800.1 | Wheat | nucleus | 39.44 | 34.57 |
| TraesCS5B01G508800.1 | Wheat | nucleus | 39.44 | 33.53 |
| CDY34429 | Canola | cytosol | 35.21 | 32.68 |
| CDX92103 | Canola | nucleus | 38.03 | 32.53 |
| Bra022184.1-P | Field mustard | nucleus | 38.03 | 32.53 |
| TraesCS3A01G538400.1 | Wheat | nucleus | 38.03 | 32.14 |
| KXG32453 | Sorghum | nucleus | 28.17 | 32.0 |
| CDX90545 | Canola | nucleus | 33.1 | 31.97 |
| CDY68751 | Canola | cytosol, mitochondrion | 22.54 | 31.68 |
| PGSC0003DMT400011779 | Potato | nucleus | 37.32 | 31.55 |
| Solyc12g099370.1.1 | Tomato | nucleus | 37.32 | 31.55 |
| Os01t0343300-01 | Rice | nucleus | 28.87 | 31.3 |
| PGSC0003DMT400063771 | Potato | nucleus | 33.1 | 31.13 |
| Zm00001d009193_P001 | Maize | plastid | 30.28 | 30.94 |
| Solyc01g100220.2.1 | Tomato | nucleus | 32.39 | 30.87 |
| Zm00001d037605_P001 | Maize | nucleus | 30.99 | 30.77 |
| CDX80603 | Canola | nucleus | 31.69 | 30.61 |
| Bra012742.1-P | Field mustard | nucleus | 35.92 | 30.54 |
| CDX95897 | Canola | nucleus | 35.21 | 30.49 |
| CDY34981 | Canola | nucleus | 36.62 | 30.41 |
| Bra021209.1-P | Field mustard | nucleus | 36.62 | 30.41 |
| TraesCS3D01G544000.1 | Wheat | nucleus | 38.03 | 30.17 |
| TraesCS3B01G603900.1 | Wheat | nucleus | 38.03 | 30.0 |
| HORVU6Hr1G093630.3 | Barley | mitochondrion | 28.17 | 29.85 |
| CDY09717 | Canola | nucleus | 36.62 | 29.38 |
| AT3G16870.1 | Thale cress | nucleus | 38.73 | 28.95 |
| CDY52723 | Canola | nucleus | 36.62 | 28.89 |
| TraesCS4A01G364700.1 | Wheat | nucleus | 36.62 | 28.73 |
| GSMUA_Achr7P09030_001 | Banana | nucleus | 30.99 | 28.21 |
| TraesCS1B01G126600.1 | Wheat | cytosol | 28.87 | 28.08 |
| Bra033533.1-P | Field mustard | nucleus | 35.21 | 27.93 |
| CDY32214 | Canola | nucleus | 35.21 | 27.93 |
| Solyc05g054400.2.1 | Tomato | nucleus | 38.73 | 27.92 |
| PGSC0003DMT400060241 | Potato | nucleus | 38.73 | 27.92 |
| Zm00001d040775_P001 | Maize | nucleus | 28.87 | 27.89 |
| CDX75893 | Canola | nucleus | 35.92 | 27.87 |
| Zm00001d011771_P001 | Maize | nucleus | 38.03 | 27.69 |
| CDX82388 | Canola | nucleus | 33.8 | 27.59 |
| KXG21349 | Sorghum | cytosol | 30.28 | 27.56 |
| TraesCS1D01G106100.1 | Wheat | cytosol | 28.17 | 27.4 |
| EES04307 | Sorghum | nucleus | 40.14 | 26.27 |
| AT4G16141.1 | Thale cress | cytosol | 35.21 | 25.38 |
| TraesCS1A01G097300.1 | Wheat | cytosol | 28.17 | 25.16 |
| GSMUA_Achr11P... | Banana | plastid | 20.42 | 24.58 |
| GSMUA_Achr10P... | Banana | mitochondrion | 33.1 | 23.5 |
| GSMUA_Achr2P15750_001 | Banana | plastid | 21.13 | 22.56 |
| Os05t0155400-01 | Rice | mitochondrion, nucleus, vacuole | 30.28 | 22.28 |
| GSMUA_Achr8P24880_001 | Banana | nucleus | 33.1 | 21.56 |
| GSMUA_Achr2P16730_001 | Banana | nucleus | 30.99 | 21.15 |
| HORVU1Hr1G022710.3 | Barley | plastid | 28.87 | 18.98 |
| GSMUA_Achr4P30820_001 | Banana | nucleus | 33.1 | 17.34 |
| GSMUA_Achr3P31070_001 | Banana | cytosol, nucleus, plastid | 22.54 | 15.17 |
| GSMUA_Achr7P25620_001 | Banana | nucleus | 22.54 | 13.73 |
| GSMUA_Achr6P27250_001 | Banana | cytosol, extracellular, nucleus | 21.83 | 13.36 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr1G26550_001 | EnsemblPlants:GSMUA_Achr1P26550_001 |
| EnsemblPlants:GSMUA_Achr1T26550_001 | InterPro:IPR000679 | InterPro:IPR013088 | UniProt:M0S3B2 | PFAM:PF00320 | PFscan:PS50114 |
| PANTHER:PTHR10071 | PANTHER:PTHR10071:SF242 | SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI0002948AF1 | InterPro:Znf_GATA |
| InterPro:Znf_NHR/GATA | SEG:seg | : | : | : | : |
Description
GATA transcription factor 16 [Source:GMGC_GENE;Acc:GSMUA_Achr1G26550_001]
Coordinates
chr1:-:22149580..22150280
Molecular Weight (calculated)
15622.8 Da
IEP (calculated)
10.227
GRAVY (calculated)
-0.690
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQMECDRRQ LWPDPMSSGG SDPSSSDSQL KSCTGCRTTK TPLWRAGPSG PKSLCNACGI RYRKSRRAVP RFEDAGAKEK REVDGGGEAF GVSFKLLMLG
101: SGLCKPTSMD RKQRRRRRRG VLGEEEQAAV LLMALSSGFL YA
101: SGLCKPTSMD RKQRRRRRRG VLGEEEQAAV LLMALSSGFL YA
001: MLDHSEKVLL VDSETMKTRA EDMIEQNNTS VNDKKKTCAD CGTSKTPLWR GGPVGPKSLC NACGIRNRKK RRGGTEDNKK LKKSSSGGGN RKFGESLKQS
101: LMDLGIRKRS TVEKQRQKLG EEEQAAVLLM ALSYGSVYA
101: LMDLGIRKRS TVEKQRQKLG EEEQAAVLLM ALSYGSVYA
Arabidopsis Description
GATA16Uncharacterized protein At5g49300 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVS9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.