Factsheet for GSMUA_Achr4P30820_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P15750_001	Banana	plastid	35.06	71.43
GSMUA_Achr10P...	Banana	mitochondrion	46.13	62.5
GSMUA_Achr7P09030_001	Banana	nucleus	32.47	56.41
GSMUA_Achr2P16730_001	Banana	nucleus	35.06	45.67
GSMUA_Achr3P00700_001	Banana	nucleus	17.71	38.71
GSMUA_Achr8P24880_001	Banana	nucleus	29.52	36.7
GSMUA_Achr7P03800_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	18.08	34.51
VIT_11s0016g02210.t01	Wine grape	nucleus, plastid	38.01	33.33
GSMUA_Achr1P26550_001	Banana	nucleus	17.34	33.1
GSMUA_Achr1P14780_001	Banana	nucleus	15.13	32.54
VIT_04s0008g01290.t01	Wine grape	plastid	35.79	31.7
GSMUA_Achr8P33850_001	Banana	nucleus	17.34	31.54
Solyc07g038160.2.1	Tomato	nucleus	30.26	30.83
GSMUA_Achr11P...	Banana	plastid	12.92	29.66
PGSC0003DMT400000761	Potato	nucleus	31.37	29.62
KRH61505	Soybean	nucleus	31.37	29.11
PGSC0003DMT400011449	Potato	nucleus	30.26	28.67
Solyc12g008830.1.1	Tomato	nucleus	30.26	27.99
KRH15535	Soybean	nucleus	29.15	25.82
KRH05458	Soybean	nucleus	28.41	25.16
Bra001644.1-P	Field mustard	nucleus	12.55	23.29
GSMUA_Achr7P25620_001	Banana	nucleus	16.61	19.31
GSMUA_Achr3P31070_001	Banana	cytosol, nucleus, plastid	14.76	18.96
GSMUA_Achr6P27250_001	Banana	cytosol, extracellular, nucleus	14.76	17.24

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr4G30820_001	EnsemblPlants:GSMUA_Achr4P30820_001
EnsemblPlants:GSMUA_Achr4T30820_001	InterPro:IPR000679	InterPro:IPR013088	UniProt:M0STJ4	PFAM:PF00320	ScanProsite:PS00344
PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF226	SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI0002966FE7
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_16.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr4G30820_001]

Coordinates

chr4:-:28250161..28251193

Molecular Weight (calculated)

29779.6 Da

IEP (calculated)

8.491

GRAVY (calculated)

-0.482

Length

271 amino acids

Sequence
(BLAST)

001: MSPLDLNQVC VIPIEEGSHL PPYAIANPSS SFSCPHLFGV RHDERGGYCI GHHLHQPQQE PEEEFQIAGS SVEYMTQRPA DPSDGITEEE EPARPGRWMS
101: PKMCFVRKTM NSTHIVVSEP RGNRLVSEFS TYYRSSSSPG GIIRVCSDCN TTKTPLWRSG PRGPKSLCNA CGIRQRKARR AMAAAALNGG LVPADAPSQV
201: QKEKELDVDR TLPFKKRCKV DTASSMTATK LCFGEAKLSS NRSSAIKKVF PQEERDAAIL LMALSCGLIR S

Best Arabidopsis Sequence Match ( AT4G26150.1 )
(BLAST)

001: MGSNFHYTID LNEDQNHQPF FASLGSSLHH HLQQQQQQQQ HFHHQASSNP SSLMSPSLSY FPFLINSRQD QVYVGYNNNT FHDVLDTHIS QPLETKNFVS
101: DGGSSSSDQM VPKKETRLKL TIKKKDNHQD QTDLPQSPIK DMTGTNSLKW ISSKVRLMKK KKAIITTSDS SKQHTNNDQS SNLSNSERQN GYNNDCVIRI
201: CSDCNTTKTP LWRSGPRGPK SLCNACGIRQ RKARRAAMAT ATATAVSGVS PPVMKKKMQN KNKISNGVYK ILSPLPLKVN TCKRMITLEE TALAEDLETQ
301: SNSTMLSSSD NIYFDDLALL LSKSSAYQQV FPQDEKEAAI LLMALSHGMV HG

Arabidopsis Description

GATA22Putative GATA transcription factor 22 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.