Factsheet for Solyc12g008830.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000761	Potato	nucleus	89.76	91.64
Solyc07g038160.2.1	Tomato	nucleus	49.15	54.14
Solyc09g075610.2.1	Tomato	plastid	13.99	46.07
GSMUA_Achr2P15750_001	Banana	plastid	19.8	43.61
GSMUA_Achr10P...	Banana	mitochondrion	28.33	41.5
VIT_04s0008g01290.t01	Wine grape	plastid	36.18	34.64
Solyc01g100220.2.1	Tomato	nucleus	16.72	32.89
Solyc01g060490.2.1	Tomato	nucleus	18.09	30.99
Solyc12g099370.1.1	Tomato	nucleus	17.41	30.36
GSMUA_Achr4P30820_001	Banana	nucleus	27.99	30.26
KRH61505	Soybean	nucleus	26.28	26.37
Solyc05g054400.2.1	Tomato	nucleus	16.04	23.86
KRH15535	Soybean	nucleus	24.57	23.53
KRH05458	Soybean	nucleus	24.23	23.2
HORVU6Hr1G039720.2	Barley	cytosol	26.62	22.67
TraesCS6A01G185900.1	Wheat	cytosol	26.28	22.51
Os02t0220400-01	Rice	nucleus	26.96	22.38
TraesCS6D01G173000.1	Wheat	cytosol	25.94	22.22
TraesCS7A01G363100.1	Wheat	nucleus	26.96	22.19
TraesCS7D01G359900.1	Wheat	nucleus	26.62	21.73
HORVU7Hr1G086810.1	Barley	nucleus	26.62	21.67
Zm00001d016361_P001	Maize	nucleus	27.3	21.62
TraesCS7B01G264800.1	Wheat	nucleus	26.62	21.61
Zm00001d046354_P001	Maize	nucleus	26.96	21.35
TraesCS6B01G214900.1	Wheat	cytosol	24.91	21.34
Solyc02g085190.1.1	Tomato	plastid	17.75	20.63
KXG29816	Sorghum	nucleus	26.96	20.41
EER88552	Sorghum	nucleus	26.62	20.21
Bra001644.1-P	Field mustard	nucleus	9.56	19.18
Os06t0571800-02	Rice	nucleus	22.18	18.73
Solyc02g062760.2.1	Tomato	nucleus	15.02	17.32

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	GO:GO:0000977	GO:GO:0001085	GO:GO:0001228	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139
GO:GO:0006355	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0045944	GO:GO:0046872	InterPro:IPR000679
InterPro:IPR013088	UniProt:K4DBX1	PFAM:PF00320	ScanProsite:PS00344	PFscan:PS50114	PANTHER:PTHR10071
PANTHER:PTHR10071:SF226	SMART:SM00401	SUPFAM:SSF57716	EnsemblPlantsGene:Solyc12g008830.1	EnsemblPlants:Solyc12g008830.1.1	UniParc:UPI0002452BB1
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:-:2159138..2161186

Molecular Weight (calculated)

32443.9 Da

IEP (calculated)

10.166

GRAVY (calculated)

-0.748

Length

293 amino acids

Sequence
(BLAST)

001: MSLVSPYNNN YQFASSSTNS SCQNFFNIST TTNIQDQSGY DYQFHQPQHH HEVDNFASRS SGSHDHVDKK NKGLKLTLWK KGGQKVKNLK VEDQKQQIIE
101: TDYSSNSSSN NNIIPIRVCS DCNTTKTPLW RSGPKGPKSL CNACGIRQRK ARRAAAAAAA ASTTPNNGTN FTSTETTTTT TMKIKVQQQK HKITKVNANH
201: VVPFKKRCKF LSSTTTPAPE PGLVPTPAPR VGSSSSSSFY NNNNNDVQQK KKICFEDFFI NLSNNLAIHR VFPQDEKEAA ILLMALSSDL VHG

Best Arabidopsis Sequence Match ( AT4G26150.1 )
(BLAST)

001: MGSNFHYTID LNEDQNHQPF FASLGSSLHH HLQQQQQQQQ HFHHQASSNP SSLMSPSLSY FPFLINSRQD QVYVGYNNNT FHDVLDTHIS QPLETKNFVS
101: DGGSSSSDQM VPKKETRLKL TIKKKDNHQD QTDLPQSPIK DMTGTNSLKW ISSKVRLMKK KKAIITTSDS SKQHTNNDQS SNLSNSERQN GYNNDCVIRI
201: CSDCNTTKTP LWRSGPRGPK SLCNACGIRQ RKARRAAMAT ATATAVSGVS PPVMKKKMQN KNKISNGVYK ILSPLPLKVN TCKRMITLEE TALAEDLETQ
301: SNSTMLSSSD NIYFDDLALL LSKSSAYQQV FPQDEKEAAI LLMALSHGMV HG

Arabidopsis Description

GATA22Putative GATA transcription factor 22 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.