Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400006011 | Potato | nucleus | 72.51 | 74.25 |
| Solyc09g075610.2.1 | Tomato | plastid | 22.81 | 43.82 |
| Solyc12g099370.1.1 | Tomato | nucleus | 38.01 | 38.69 |
| Solyc01g100220.2.1 | Tomato | nucleus | 29.24 | 33.56 |
| Solyc05g054400.2.1 | Tomato | nucleus | 32.75 | 28.43 |
| Solyc07g038160.2.1 | Tomato | nucleus | 30.41 | 19.55 |
| Solyc12g008830.1.1 | Tomato | nucleus | 30.99 | 18.09 |
| Solyc02g085190.1.1 | Tomato | plastid | 25.15 | 17.06 |
| Solyc02g062760.2.1 | Tomato | nucleus | 22.81 | 15.35 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:GO:0000977 | GO:GO:0001085 | GO:GO:0001228 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003682 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005667 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0006366 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0045944 | GO:GO:0046872 | InterPro:IPR000679 |
| InterPro:IPR013088 | UniProt:K4AWF2 | PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 | PANTHER:PTHR10071 |
| PANTHER:PTHR10071:SF242 | SMART:SM00401 | SUPFAM:SSF57716 | EnsemblPlantsGene:Solyc01g060490.2 | EnsemblPlants:Solyc01g060490.2.1 | UniParc:UPI0002762530 |
| InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1:+:71190764..71191676
Molecular Weight (calculated)
18570.7 Da
IEP (calculated)
8.583
GRAVY (calculated)
-0.333
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLTDKVIGS EATEMTTPEV MISSEMEVKA AEMMISPEIK AKAPEVISSE IQMKTPEVIS SEIQMKNCVN CGAMKTPLWR SGPAGPKSLC NACGIRSRKK
101: KRDLLGLNKD EKKTKKSSAN SASSSNVDKK KKKKICAVKN ADAIPIHWTD LDDVEQAAFL LMCLSCSSVC A
101: KRDLLGLNKD EKKTKKSSAN SASSSNVDKK KKKKICAVKN ADAIPIHWTD LDDVEQAAFL LMCLSCSSVC A
001: MLDHSEKVLL VDSETMKTRA EDMIEQNNTS VNDKKKTCAD CGTSKTPLWR GGPVGPKSLC NACGIRNRKK RRGGTEDNKK LKKSSSGGGN RKFGESLKQS
101: LMDLGIRKRS TVEKQRQKLG EEEQAAVLLM ALSYGSVYA
101: LMDLGIRKRS TVEKQRQKLG EEEQAAVLLM ALSYGSVYA
Arabidopsis Description
GATA16Uncharacterized protein At5g49300 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVS9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.