Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g060490.2.1 | Tomato | nucleus | 74.25 | 72.51 |
| PGSC0003DMT400081417 | Potato | nucleus | 26.35 | 41.51 |
| PGSC0003DMT400011779 | Potato | nucleus | 40.72 | 40.48 |
| PGSC0003DMT400063771 | Potato | nucleus | 29.94 | 33.11 |
| PGSC0003DMT400060241 | Potato | nucleus | 35.93 | 30.46 |
| PGSC0003DMT400011449 | Potato | nucleus | 30.54 | 17.83 |
| PGSC0003DMT400000761 | Potato | nucleus | 30.54 | 17.77 |
| PGSC0003DMT400009031 | Potato | plastid | 22.75 | 15.38 |
| PGSC0003DMT400040074 | Potato | nucleus | 20.96 | 14.11 |
Protein Annotations
| EntrezGene:102580153 | MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046872 | InterPro:IPR000679 |
| InterPro:IPR013088 | UniProt:M0ZQP5 | PFAM:PF00320 | EnsemblPlantsGene:PGSC0003DMG400002337 | PGSC:PGSC0003DMG400002337 | EnsemblPlants:PGSC0003DMT400006011 |
| ScanProsite:PS00344 | PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF242 | SMART:SM00401 | SUPFAM:SSF57716 |
| UniParc:UPI0002963F4A | RefSeq:XP_006363584.1 | RefSeq:XP_006363585.1 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg |
Description
GATA transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400002337]
Coordinates
chr1:-:12242006..12242996
Molecular Weight (calculated)
17869.4 Da
IEP (calculated)
9.376
GRAVY (calculated)
-0.359
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSDKVMGS EEVITGLAME IATPEVISSE IQVKAAEVIS SEIQVKTPEV ISSEIQQKTC VDCGAIKTPL WRSGPAGPKS LCNACGIRSR KKKRDLLGLN
101: KDDKKTKKSS ANSASSSGDS ASSSNVEKKK KAPVKRADSI SLHWSKLDEV ERAAFLLMSL SCSSVRA
101: KDDKKTKKSS ANSASSSGDS ASSSNVEKKK KAPVKRADSI SLHWSKLDEV ERAAFLLMSL SCSSVRA
001: MSMTEETKTT KLESAGDSSD VDNGNCSSSG SGGDTKKTCV DCGTSRTPLW RGGPAGPKSL CNACGIKSRK KRQAALGIRQ DDIKIKSKSN NNLGLESRNV
101: KTGKGEPVNV KIAKCEPGIV KIAKGEPGNV KNKIKRDPEN SSSSNNNKKN VKRVGRFLDF GFKVPAMKRS AVEKKRLWRK LGEEERAAVL LMALSCG
101: KTGKGEPVNV KIAKCEPGIV KIAKGEPGNV KNKIKRDPEN SSSSNNNKKN VKRVGRFLDF GFKVPAMKRS AVEKKRLWRK LGEEERAAVL LMALSCG
Arabidopsis Description
GATA type zinc finger transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:Q8GW81]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.