Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g099370.1.1 | Tomato | nucleus | 97.02 | 97.02 |
| VIT_05s0077g01450.t01 | Wine grape | nucleus | 52.38 | 57.52 |
| CDX86241 | Canola | nucleus | 42.26 | 55.91 |
| Bra037421.1-P | Field mustard | nucleus | 42.26 | 55.91 |
| CDX85400 | Canola | nucleus | 41.07 | 54.33 |
| CDY05639 | Canola | nucleus | 41.07 | 52.67 |
| KRH02314 | Soybean | nucleus | 43.45 | 52.14 |
| PGSC0003DMT400060241 | Potato | nucleus | 60.12 | 51.27 |
| PGSC0003DMT400081417 | Potato | nucleus | 32.14 | 50.94 |
| AT5G49300.1 | Thale cress | cytosol | 41.07 | 49.64 |
| CDY33918 | Canola | nucleus | 41.07 | 48.94 |
| Bra020650.1-P | Field mustard | nucleus | 39.88 | 47.86 |
| AT3G06740.1 | Thale cress | nucleus | 41.67 | 46.98 |
| Bra040288.1-P | Field mustard | nucleus | 38.1 | 46.04 |
| CDY34933 | Canola | nucleus | 38.1 | 45.71 |
| KRH50773 | Soybean | nucleus | 42.86 | 45.57 |
| GSMUA_Achr3P00700_001 | Banana | nucleus | 33.33 | 45.16 |
| PGSC0003DMT400063771 | Potato | nucleus | 39.88 | 44.37 |
| Os01t0976800-01 | Rice | nucleus | 36.31 | 42.96 |
| CDX90545 | Canola | nucleus | 36.31 | 41.5 |
| CDY34429 | Canola | cytosol | 37.5 | 41.18 |
| CDX92103 | Canola | nucleus | 40.48 | 40.96 |
| Bra022184.1-P | Field mustard | nucleus | 40.48 | 40.96 |
| CDY34981 | Canola | nucleus | 41.67 | 40.94 |
| Bra021209.1-P | Field mustard | nucleus | 41.67 | 40.94 |
| PGSC0003DMT400006011 | Potato | nucleus | 40.48 | 40.72 |
| GSMUA_Achr1P14780_001 | Banana | nucleus | 30.36 | 40.48 |
| CDX95897 | Canola | nucleus | 39.29 | 40.24 |
| EER93149 | Sorghum | nucleus | 36.9 | 39.49 |
| Zm00001d034751_P001 | Maize | nucleus | 38.1 | 39.26 |
| KXG32453 | Sorghum | nucleus | 29.17 | 39.2 |
| Os01t0343300-01 | Rice | nucleus | 30.36 | 38.93 |
| CDY52723 | Canola | nucleus | 41.67 | 38.89 |
| CDX82388 | Canola | nucleus | 39.88 | 38.51 |
| Bra012742.1-P | Field mustard | nucleus | 38.1 | 38.32 |
| HORVU5Hr1G116310.1 | Barley | nucleus | 36.9 | 38.27 |
| Bra033533.1-P | Field mustard | nucleus | 40.48 | 37.99 |
| CDY32214 | Canola | nucleus | 40.48 | 37.99 |
| GSMUA_Achr1P26550_001 | Banana | nucleus | 31.55 | 37.32 |
| TraesCS5D01G508800.1 | Wheat | nucleus | 35.71 | 37.04 |
| GSMUA_Achr8P33850_001 | Banana | nucleus | 32.74 | 36.91 |
| CDY09717 | Canola | nucleus | 38.69 | 36.72 |
| TraesCS3A01G538400.1 | Wheat | nucleus | 36.31 | 36.31 |
| TraesCS5B01G508800.1 | Wheat | nucleus | 35.71 | 35.93 |
| CDX75893 | Canola | nucleus | 38.69 | 35.52 |
| AT3G16870.1 | Thale cress | nucleus | 39.88 | 35.26 |
| GSMUA_Achr7P03800_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 29.76 | 35.21 |
| Zm00001d009193_P001 | Maize | plastid | 28.57 | 34.53 |
| HORVU6Hr1G093630.3 | Barley | mitochondrion | 27.38 | 34.33 |
| TraesCS3D01G544000.1 | Wheat | nucleus | 36.31 | 34.08 |
| AT4G16141.1 | Thale cress | cytosol | 39.88 | 34.01 |
| Zm00001d037605_P001 | Maize | nucleus | 28.57 | 33.57 |
| TraesCS1D01G106100.1 | Wheat | cytosol | 29.17 | 33.56 |
| TraesCS3B01G603900.1 | Wheat | nucleus | 35.71 | 33.33 |
| TraesCS1B01G126600.1 | Wheat | cytosol | 28.57 | 32.88 |
| Zm00001d040775_P001 | Maize | nucleus | 27.98 | 31.97 |
| KXG21349 | Sorghum | cytosol | 29.17 | 31.41 |
| TraesCS4A01G364700.1 | Wheat | nucleus | 33.33 | 30.94 |
| TraesCS1A01G097300.1 | Wheat | cytosol | 29.17 | 30.82 |
| Zm00001d011771_P001 | Maize | nucleus | 34.52 | 29.74 |
| EES04307 | Sorghum | nucleus | 36.31 | 28.11 |
| Os05t0155400-01 | Rice | mitochondrion, nucleus, vacuole | 31.55 | 27.46 |
| HORVU1Hr1G022710.3 | Barley | plastid | 28.57 | 22.22 |
| PGSC0003DMT400000761 | Potato | nucleus | 30.36 | 17.77 |
| PGSC0003DMT400011449 | Potato | nucleus | 28.57 | 16.78 |
| PGSC0003DMT400009031 | Potato | plastid | 23.21 | 15.79 |
| PGSC0003DMT400040074 | Potato | nucleus | 19.64 | 13.31 |
Protein Annotations
| EntrezGene:102581535 | MapMan:15.5.1.3 | Gene3D:3.30.50.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046872 | InterPro:IPR000679 |
| InterPro:IPR013088 | UniProt:M1A054 | PFAM:PF00320 | EnsemblPlantsGene:PGSC0003DMG400004624 | PGSC:PGSC0003DMG400004624 | EnsemblPlants:PGSC0003DMT400011779 |
| ScanProsite:PS00344 | PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF242 | SMART:SM00401 | SUPFAM:SSF57716 |
| UniParc:UPI000295FF5B | RefSeq:XP_006349829.1 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg | : |
Description
GATA transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400004624]
Coordinates
chr12:+:60086067..60088444
Molecular Weight (calculated)
18465.8 Da
IEP (calculated)
10.296
GRAVY (calculated)
-0.887
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDTSDKVQE TGEMIGQNQT PERVSSETNQ KTCVDCGTTK TPLWRGGPAG PKSLCNACGI RSRKKRRALL GLNKDDKKSK KSLSKSVVNH HPQNQSSNSS
101: SSTSSSGEST NNVIVKNECI PYKKRLLHFD REVGLQRPRS NSTHRRKLGE EEQAAFLLMA LSCGSVYA
101: SSTSSSGEST NNVIVKNECI PYKKRLLHFD REVGLQRPRS NSTHRRKLGE EEQAAFLLMA LSCGSVYA
001: MLDPTEKVID SESMESKLTS VDAIEEHSSS SSNEAISNEK KSCAICGTSK TPLWRGGPAG PKSLCNACGI RNRKKRRTLI SNRSEDKKKK SHNRNPKFGD
101: SLKQRLMELG REVMMQRSTA ENQRRNKLGE EEQAAVLLMA LSYASSVYA
101: SLKQRLMELG REVMMQRSTA ENQRRNKLGE EEQAAVLLMA LSYASSVYA
Arabidopsis Description
GATA15GATA transcription factor 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8LG10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.