Factsheet for PGSC0003DMT400009031

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009031	nucleus, nucleus
PGSC0003DMT400040074	nucleus, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50870.1	PGSC0003DMT400009031	AT3G50870.1	23335616
AT3G50870.1	PGSC0003DMT400040074	AT3G50870.1	23335616
AT3G50870.1	PGSC0003DMT400009031	AT3G50870.1	23335616
AT3G50870.1	PGSC0003DMT400040074	AT3G50870.1	23335616
AT3G50870.1	PGSC0003DMT400009031	AT4G36620.1	23335616
AT3G50870.1	PGSC0003DMT400040074	AT4G36620.1	23335616
AT3G50870.1	PGSC0003DMT400009031	AT4G36620.1	23335616
AT3G50870.1	PGSC0003DMT400040074	AT4G36620.1	23335616

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g085190.1.1	Tomato	plastid	91.5	89.68
KRH30068	Soybean	plastid	38.46	60.9
KRH28681	Soybean	nucleus	59.11	59.59
PGSC0003DMT400040074	Potato	nucleus	54.25	54.03
KRH08269	Soybean	nucleus	54.66	53.78
KRH69915	Soybean	nucleus	51.42	50.4
CDY53079	Canola	cytosol	40.49	48.31
Bra010563.1-P	Field mustard	cytosol	40.89	47.42
CDY24779	Canola	nucleus	40.89	47.42
AT4G36620.1	Thale cress	cytosol	39.68	46.45
Bra017766.1-P	Field mustard	nucleus	35.22	46.03
CDX72587	Canola	cytosol	42.11	45.81
CDY69687	Canola	nucleus	34.82	45.5
CDY68627	Canola	nucleus	40.89	45.5
CDY70754	Canola	nucleus	40.89	45.29
Bra011695.1-P	Field mustard	nucleus	40.89	45.29
CDX69237	Canola	nucleus	40.49	44.84
CDY13040	Canola	cytosol	34.41	42.71
CDY72649	Canola	nucleus	34.41	42.5
CDX77958	Canola	nucleus	45.34	42.11
CDX73777	Canola	nucleus	48.99	41.72
CDY28986	Canola	cytosol	46.15	41.61
Bra036854.1-P	Field mustard	nucleus	48.58	41.52
CDY45238	Canola	nucleus	38.87	40.68
Bra012080.1-P	Field mustard	nucleus	38.87	40.68
AT2G18380.1	Thale cress	cytosol	34.01	40.38
CDY60289	Canola	nucleus	32.79	40.1
AT3G50870.1	Thale cress	cytosol	47.77	40.0
CDX90680	Canola	nucleus	44.94	39.93
Bra012883.1-P	Field mustard	nucleus	44.94	39.93
CDY51221	Canola	nucleus	32.39	39.8
Bra039614.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	21.46	38.69
CDY30768	Canola	nucleus	35.22	38.16
GSMUA_Achr6P27250_001	Banana	cytosol, extracellular, nucleus	34.82	37.07
Zm00001d043969_P001	Maize	endoplasmic reticulum	34.41	36.48
TraesCS3B01G269000.1	Wheat	cytosol, extracellular, nucleus	32.79	36.16
KXG33047	Sorghum	extracellular	35.63	36.07
TraesCS3D01G241100.1	Wheat	cytosol, extracellular, nucleus	33.2	35.65
GSMUA_Achr7P25620_001	Banana	nucleus	33.6	35.62
HORVU3Hr1G059870.2	Barley	cytosol, extracellular, nucleus	33.2	35.34
Os01t0662800-00	Rice	cytosol, extracellular, nucleus	34.41	35.12
GSMUA_Achr3P31070_001	Banana	cytosol, nucleus, plastid	29.96	35.07
TraesCS3A01G240800.1	Wheat	cytosol, extracellular, nucleus	33.2	35.04
Zm00001d009604_P001	Maize	cytosol, nucleus, plastid	27.94	33.99
EES19963	Sorghum	mitochondrion, nucleus, vacuole	29.15	31.44
Bra037221.1-P	Field mustard	nucleus	29.96	31.22
Os05t0567900-00	Rice	cytosol, extracellular, plastid	31.17	30.8
PGSC0003DMT400081417	Potato	nucleus	12.15	28.3
PGSC0003DMT400011779	Potato	nucleus	15.79	23.21
PGSC0003DMT400006011	Potato	nucleus	15.38	22.75
PGSC0003DMT400063771	Potato	nucleus	12.55	20.53
PGSC0003DMT400060241	Potato	nucleus	14.98	18.78
PGSC0003DMT400000761	Potato	nucleus	19.43	16.72
PGSC0003DMT400011449	Potato	nucleus	19.03	16.43

Protein Annotations

EntrezGene:102596373	MapMan:15.5.1.3	Gene3D:3.30.50.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0046872	InterPro:IPR000679
InterPro:IPR013088	UniProt:M0ZVG9	PFAM:PF00320	EnsemblPlantsGene:PGSC0003DMG400003508	PGSC:PGSC0003DMG400003508	EnsemblPlants:PGSC0003DMT400009031
ScanProsite:PS00344	PFscan:PS50114	PANTHER:PTHR10071	PANTHER:PTHR10071:SF305	SMART:SM00401	SUPFAM:SSF57716
UniParc:UPI000295EE95	RefSeq:XP_006340931.1	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:

Description

GATA transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400003508]

Coordinates

chr2:-:40441410..40442760

Molecular Weight (calculated)

27652.0 Da

IEP (calculated)

8.590

GRAVY (calculated)

-0.819

Length

247 amino acids

Sequence
(BLAST)

001: MMHRCSGSMV GPCSCGLFHN QTGSTTSSSA FSMLFSHEYS ENMYSFAPSS VDCTLSLGTP STRLINDDNH EKRSSNNHER RRSSSNCMSN FWDILHPRQH
101: LTTPPSKSTR APNNNSTTDP LVARRCANCD TTSTPLWRNG PRGPKSLCNA CGIRFKKEER RASAAAATAN GGGRMETTTH QHWVHHHHHS QPTKMPCFSS
201: ATYGNEFRFI EDNEHHRDSD AAATAIPFFP WRLNVADRPS LVHDFTR

Best Arabidopsis Sequence Match ( AT3G50870.1 )
(BLAST)

001: MMQTPYTTST QGQYCHSCGM FHHHSQSCCY NNNNNSNAGS YSMVFSMQNG GVFEQNGEDY HHSSSLVDCT LSLGTPSTRL CEEDEKRRRS TSSGASSCIS
101: NFWDLIHTKN NNSKTAPYNN VPSFSANKPS RGCSGGGGGG GGGGGGDSLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRT TAATGNTVVG
201: AAPVQTDQYG HHNSGYNNYH AATNNNNNNG TPWAHHHSTQ RVPCNYPANE IRFMDDYGSG VANNVESDGA HGGVPFLSWR LNVADRASLV HDFTR

Arabidopsis Description

GATA18Uncharacterized protein At3g50870 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVE1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.