Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13040 | Canola | cytosol | 78.85 | 82.41 |
| Bra039614.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 53.85 | 81.75 |
| CDY60289 | Canola | nucleus | 79.33 | 81.68 |
| CDY51221 | Canola | nucleus | 77.88 | 80.6 |
| CDY72649 | Canola | nucleus | 77.4 | 80.5 |
| Bra037221.1-P | Field mustard | nucleus | 64.9 | 56.96 |
| AT4G36620.1 | Thale cress | cytosol | 46.15 | 45.5 |
| VIT_04s0023g01840.t01 | Wine grape | cytosol, plastid | 43.75 | 37.92 |
| Solyc02g085190.1.1 | Tomato | plastid | 41.35 | 34.13 |
| PGSC0003DMT400009031 | Potato | plastid | 40.38 | 34.01 |
| PGSC0003DMT400040074 | Potato | nucleus | 40.38 | 33.87 |
| Solyc02g062760.2.1 | Tomato | nucleus | 38.94 | 31.89 |
| KRH43324 | Soybean | nucleus | 20.19 | 30.88 |
| AT3G50870.1 | Thale cress | cytosol | 43.75 | 30.85 |
| GSMUA_Achr3P31070_001 | Banana | cytosol, nucleus, plastid | 29.81 | 29.38 |
| GSMUA_Achr6P27250_001 | Banana | cytosol, extracellular, nucleus | 32.21 | 28.88 |
| Zm00001d009604_P001 | Maize | cytosol, nucleus, plastid | 27.4 | 28.08 |
| GSMUA_Achr7P25620_001 | Banana | nucleus | 31.25 | 27.9 |
| TraesCS3D01G241100.1 | Wheat | cytosol, extracellular, nucleus | 30.29 | 27.39 |
| TraesCS3B01G269000.1 | Wheat | cytosol, extracellular, nucleus | 29.33 | 27.23 |
| HORVU3Hr1G059870.2 | Barley | cytosol, extracellular, nucleus | 30.29 | 27.16 |
| TraesCS3A01G240800.1 | Wheat | cytosol, extracellular, nucleus | 30.29 | 26.92 |
| Zm00001d043969_P001 | Maize | endoplasmic reticulum | 29.81 | 26.61 |
| KXG33047 | Sorghum | extracellular | 29.81 | 25.41 |
| Os01t0662800-00 | Rice | cytosol, extracellular, nucleus | 29.33 | 25.21 |
| EES19963 | Sorghum | mitochondrion, nucleus, vacuole | 27.4 | 24.89 |
| Os05t0567900-00 | Rice | cytosol, extracellular, plastid | 28.85 | 24.0 |
| AT5G26930.1 | Thale cress | cytosol | 13.46 | 23.33 |
| AT5G49300.1 | Thale cress | cytosol | 13.94 | 20.86 |
| AT3G06740.1 | Thale cress | nucleus | 12.98 | 18.12 |
| AT3G16870.1 | Thale cress | nucleus | 14.9 | 16.32 |
| AT4G16141.1 | Thale cress | cytosol | 13.94 | 14.72 |
| AT4G26150.1 | Thale cress | cytosol | 19.71 | 11.65 |
| AT5G56860.1 | Thale cress | nucleus | 19.23 | 10.05 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | EntrezGene:816353 | UniProt:A0A178VWM7 | ProteinID:AAD15499.1 | EMBL:AB493551 |
| ProteinID:AEC06763.1 | ArrayExpress:AT2G18380 | EnsemblPlantsGene:AT2G18380 | RefSeq:AT2G18380 | TAIR:AT2G18380 | RefSeq:AT2G18380-TAIR-G |
| EnsemblPlants:AT2G18380.1 | TAIR:AT2G18380.1 | EMBL:BT029505 | Symbol:GATA20 | GO:GO:0000977 | GO:GO:0001085 |
| GO:GO:0001228 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003682 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005667 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006366 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 |
| GO:GO:0044212 | GO:GO:0045944 | GO:GO:0046872 | InterPro:IPR000679 | InterPro:IPR013088 | RefSeq:NP_179429.2 |
| ProteinID:OAP10254.1 | PFAM:PF00320 | PO:PO:0000026 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0003015 | PO:PO:0004507 | PO:PO:0006077 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025257 | ScanProsite:PS00344 |
| PFscan:PS50114 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF305 | UniProt:Q9ZPX0 | SMART:SM00401 | SUPFAM:SSF57716 |
| UniParc:UPI0001739145 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg | : | : |
Description
GATA20HANL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWM7]
Coordinates
chr2:-:7982556..7984126
Molecular Weight (calculated)
23028.1 Da
IEP (calculated)
7.960
GRAVY (calculated)
-0.880
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MMGYQTNSNF SMFFSSENDD QNHHNYDPYN NFSSSTSVDC TLSLGTPSTR LDDHHRFSSA NSNNISGDFY IHGGNAKTSS YKKGGVAHSL PRRCASCDTT
101: STPLWRNGPK GPKSLCNACG IRFKKEERRA TARNLTISGG GSSAAEVPVE NSYNGGGNYY SHHHHHYASS SPSWAHQNTQ RVPYFSPVPE MEYPYVDNVT
201: ASSFMSWN
101: STPLWRNGPK GPKSLCNACG IRFKKEERRA TARNLTISGG GSSAAEVPVE NSYNGGGNYY SHHHHHYASS SPSWAHQNTQ RVPYFSPVPE MEYPYVDNVT
201: ASSFMSWN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.