Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d009604_P001 | nucleus, nucleus |
| Zm00001d016361_P001 | nucleus, nucleus |
| Zm00001d043969_P001 | nucleus, nucleus |
| Zm00001d046354_P001 | nucleus, nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG33047 | Sorghum | extracellular | 93.99 | 89.75 |
| TraesCS3B01G269000.1 | Wheat | cytosol, extracellular, nucleus | 77.25 | 80.36 |
| TraesCS3D01G241100.1 | Wheat | cytosol, extracellular, nucleus | 78.97 | 80.0 |
| TraesCS3A01G240800.1 | Wheat | cytosol, extracellular, nucleus | 78.97 | 78.63 |
| HORVU3Hr1G059870.2 | Barley | cytosol, extracellular, nucleus | 77.68 | 78.02 |
| Os01t0662800-00 | Rice | cytosol, extracellular, nucleus | 78.54 | 75.62 |
| Zm00001d009604_P001 | Maize | cytosol, nucleus, plastid | 45.49 | 52.22 |
| GSMUA_Achr7P25620_001 | Banana | nucleus | 47.64 | 47.64 |
| GSMUA_Achr6P27250_001 | Banana | cytosol, extracellular, nucleus | 46.78 | 46.98 |
| GSMUA_Achr3P31070_001 | Banana | cytosol, nucleus, plastid | 39.06 | 43.13 |
| KRH30068 | Soybean | plastid | 25.75 | 38.46 |
| Bra039614.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 20.6 | 35.04 |
| PGSC0003DMT400009031 | Potato | plastid | 36.48 | 34.41 |
| KRH28681 | Soybean | nucleus | 36.05 | 34.29 |
| VIT_04s0023g01840.t01 | Wine grape | cytosol, plastid | 34.76 | 33.75 |
| Solyc02g085190.1.1 | Tomato | plastid | 36.48 | 33.73 |
| CDY13040 | Canola | cytosol | 28.76 | 33.67 |
| AT4G36620.1 | Thale cress | cytosol | 30.47 | 33.65 |
| CDY72649 | Canola | nucleus | 28.76 | 33.5 |
| CDY60289 | Canola | nucleus | 28.76 | 33.17 |
| KRH08269 | Soybean | nucleus | 35.62 | 33.07 |
| CDY24779 | Canola | nucleus | 30.04 | 32.86 |
| Bra010563.1-P | Field mustard | cytosol | 30.04 | 32.86 |
| CDY53079 | Canola | cytosol | 29.18 | 32.85 |
| CDY69687 | Canola | nucleus | 26.61 | 32.8 |
| Bra017766.1-P | Field mustard | nucleus | 26.61 | 32.8 |
| KRH69915 | Soybean | nucleus | 35.19 | 32.54 |
| CDY70754 | Canola | nucleus | 30.9 | 32.29 |
| Bra011695.1-P | Field mustard | nucleus | 30.9 | 32.29 |
| CDY68627 | Canola | nucleus | 30.47 | 31.98 |
| CDY51221 | Canola | nucleus | 27.47 | 31.84 |
| Zm00001d009668_P001 | Maize | mitochondrion, nucleus | 36.48 | 31.48 |
| CDX69237 | Canola | nucleus | 30.04 | 31.39 |
| CDX77958 | Canola | nucleus | 35.62 | 31.2 |
| CDX72587 | Canola | cytosol | 30.04 | 30.84 |
| AT2G18380.1 | Thale cress | cytosol | 26.61 | 29.81 |
| CDY28986 | Canola | cytosol | 34.76 | 29.56 |
| Bra036854.1-P | Field mustard | nucleus | 36.48 | 29.41 |
| CDX73777 | Canola | nucleus | 36.48 | 29.31 |
| PGSC0003DMT400040074 | Potato | nucleus | 30.9 | 29.03 |
| Zm00001d039113_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 35.19 | 28.87 |
| Solyc02g062760.2.1 | Tomato | nucleus | 31.33 | 28.74 |
| CDX90680 | Canola | nucleus | 33.48 | 28.06 |
| Bra012883.1-P | Field mustard | nucleus | 33.48 | 28.06 |
| AT3G50870.1 | Thale cress | cytosol | 35.19 | 27.8 |
| CDY30768 | Canola | nucleus | 26.61 | 27.19 |
| CDY45238 | Canola | nucleus | 27.47 | 27.12 |
| Bra012080.1-P | Field mustard | nucleus | 27.47 | 27.12 |
| Bra037221.1-P | Field mustard | nucleus | 27.04 | 26.58 |
| KRH43324 | Soybean | nucleus | 15.02 | 25.74 |
| Zm00001d037605_P001 | Maize | nucleus | 14.59 | 23.78 |
| Zm00001d009193_P001 | Maize | plastid | 14.16 | 23.74 |
| Zm00001d040775_P001 | Maize | nucleus | 13.73 | 21.77 |
| Zm00001d011771_P001 | Maize | nucleus | 16.74 | 20.0 |
| Zm00001d034751_P001 | Maize | nucleus | 13.73 | 19.63 |
| Zm00001d046354_P001 | Maize | nucleus | 21.46 | 13.51 |
| Zm00001d016361_P001 | Maize | nucleus | 21.03 | 13.24 |
Protein Annotations
| EntrezGene:103651395 | MapMan:15.5.1.3 | Gene3D:3.30.50.10 | UniProt:A0A1D6NGI0 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046872 |
| InterPro:IPR000679 | InterPro:IPR013088 | ProteinID:ONM39540.1 | PFAM:PF00320 | ScanProsite:PS00344 | PFscan:PS50114 |
| PANTHER:PTHR10071 | PANTHER:PTHR10071:SF305 | SMART:SM00401 | SUPFAM:SSF57716 | UniParc:UPI000221F7C8 | EnsemblPlantsGene:Zm00001d043969 |
| EnsemblPlants:Zm00001d043969_P001 | EnsemblPlants:Zm00001d043969_T001 | InterPro:Znf_GATA | InterPro:Znf_NHR/GATA | SEG:seg | : |
Description
C2C2-GATA-transcription factor 35GATA transcription factor 19
Coordinates
chr3:-:215346971..215347825
Molecular Weight (calculated)
23567.6 Da
IEP (calculated)
7.524
GRAVY (calculated)
-0.137
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHEAAPCTC GLLYGSCGGG CSLLFAAAAA GADHYYKHCG GGDGEAFSGG LYGGSVDCTL SLGTPSTRRA EAGAAARAPA GLHSWEAPAP SCNGGRQQEA
101: RGAEAGARRC ANCDTTSTPL WRNGPRGPKS LCNACGIRYK KEERRAAAAA VAPAADGGVD YAASYGGYAR QPQQWGCYGP AAAVAKAASL GMFGVDAAAE
201: VVDGPCLPWG LGVMPSSPAF GAVREMPSLF QYY
101: RGAEAGARRC ANCDTTSTPL WRNGPRGPKS LCNACGIRYK KEERRAAAAA VAPAADGGVD YAASYGGYAR QPQQWGCYGP AAAVAKAASL GMFGVDAAAE
201: VVDGPCLPWG LGVMPSSPAF GAVREMPSLF QYY
001: MMGYQTNSNF SMFFSSENDD QNHHNYDPYN NFSSSTSVDC TLSLGTPSTR LDDHHRFSSA NSNNISGDFY IHGGNAKTSS YKKGGVAHSL PRRCASCDTT
101: STPLWRNGPK GPKSLCNACG IRFKKEERRA TARNLTISGG GSSAAEVPVE NSYNGGGNYY SHHHHHYASS SPSWAHQNTQ RVPYFSPVPE MEYPYVDNVT
201: ASSFMSWN
101: STPLWRNGPK GPKSLCNACG IRFKKEERRA TARNLTISGG GSSAAEVPVE NSYNGGGNYY SHHHHHYASS SPSWAHQNTQ RVPYFSPVPE MEYPYVDNVT
201: ASSFMSWN
Arabidopsis Description
GATA20HANL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWM7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.